Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_I10
(152 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2) id... 48 6e-07
At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1) (... 48 6e-07
At3g46850.1 68416.m05085 subtilase family protein contains simil... 28 0.73
At3g46840.1 68416.m05084 subtilase family protein contains simil... 28 0.73
At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00... 27 1.3
At4g19130.1 68417.m02823 replication protein-related similar to ... 27 1.3
At5g45400.1 68418.m05579 replication protein, putative similar t... 26 3.0
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 25 6.8
At3g53680.1 68416.m05928 PHD finger transcription factor, putati... 25 6.8
At5g58840.1 68418.m07373 subtilase family protein contains simil... 25 9.0
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 25 9.0
At4g11910.1 68417.m01894 expressed protein hypothetical protein ... 25 9.0
>At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2)
identical to residues 14-204 of 20S proteasome beta
subunit PBC2 GB:AAC32069 [Arabidopsis thaliana]
Length = 204
Score = 48.4 bits (110), Expect = 6e-07
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +2
Query: 53 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQ 151
MSI YNG AVVAM G++C AIA+D+R G+Q Q
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQ 33
>At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1)
(PRCT) almost identical to GB:AAC32069 from [Arabidopsis
thaliana], EST gb|T76747 comes from this gene; identical
to cDNA proteasome subunit prct GI:2511567
Length = 204
Score = 48.4 bits (110), Expect = 6e-07
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +2
Query: 53 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQ 151
MSI YNG AVVAM G++C AIA+D+R G+Q Q
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQ 33
>At3g46850.1 68416.m05085 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 736
Score = 28.3 bits (60), Expect = 0.73
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 144 WIPKRLSVAIATQSWPFIATTAP 76
W P + AI T +WP A+T+P
Sbjct: 547 WSPSMIQSAIMTTAWPMNASTSP 569
>At3g46840.1 68416.m05084 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 738
Score = 28.3 bits (60), Expect = 0.73
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 144 WIPKRLSVAIATQSWPFIATTAP 76
W P + AI T +WP A+T+P
Sbjct: 547 WSPSMIQSAIMTTAWPMNASTSP 569
>At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 566
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 142 DTKAFVRSDSHTVLALHRNNCTSIVR 65
D AFV D+ T++ LHR N T I++
Sbjct: 503 DFLAFVWKDTKTMITLHRLNLTEILK 528
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 73 WRCSCCDEGPRLCGYRY 123
WRC CD+ C YRY
Sbjct: 230 WRCEKCDKSVDECDYRY 246
>At5g45400.1 68418.m05579 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain, PF04057:
Replication factor-A protein 1, N-terminal domain
Length = 853
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 73 WRCSCCDEGPRLCGYRY 123
WRC CD+ C YRY
Sbjct: 623 WRCEKCDKCVDECDYRY 639
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 71 NGGAVVAMKGQDCVAIATDKR 133
NGG VA+ G D IA D R
Sbjct: 14 NGGTCVAIAGSDYCVIAADTR 34
>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
predicted proteins, Arabidopsis thaliana
Length = 839
Score = 25.0 bits (52), Expect = 6.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 73 WRCSCCDEGPRLC 111
W CS C++GP C
Sbjct: 523 WYCSSCNDGPTSC 535
>At5g58840.1 68418.m07373 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]; non-consensus acceptor site TT at exon 6
Length = 713
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 144 WIPKRLSVAIATQSWPFIAT 85
W P + AI T +WP AT
Sbjct: 519 WSPSMIQSAIMTTAWPMNAT 538
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -3
Query: 144 WIPKRLSVAIATQSWPFIATT-APP 73
W P +S T WP + +T APP
Sbjct: 1073 WCPVLVSAPFQTLPWPVVTSTVAPP 1097
>At4g11910.1 68417.m01894 expressed protein hypothetical protein
F7H19.100 -Arabidopsis thaliana,PID:e1310060
Length = 466
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 95 SSQQLHLHCTLVSTFYSLD*IFTVRCFF*YC 3
S+ LH+HC + + LD I +R +F +C
Sbjct: 316 SNMSLHVHCHISGDHFLLDLIAELR-YFIFC 345
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,642
Number of Sequences: 28952
Number of extensions: 44093
Number of successful extensions: 105
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 12,070,560
effective HSP length: 31
effective length of database: 11,173,048
effective search space used: 212287912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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