Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_I09
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 4e-15
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 79 4e-15
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 71 1e-12
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 49 4e-06
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 38 0.007
SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08) 28 5.4
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 5.4
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 28 7.1
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 78.6 bits (185), Expect = 4e-15
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Frame = +3
Query: 90 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 269
+CY+ + + R + LP D++P L CTH++Y A I T K+ + N D
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----R 453
Query: 270 NYRAITNLKRQFPQLRVFLTVGGDDDTEDP-QKYNLLLESPQARTAFTNSALLLAEQYGF 446
Y+ I +LK + P L+ L VGG + P ++ ++ S RT F +S L L+++Y F
Sbjct: 454 LYKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513
Query: 447 DGIDLSWQLP 476
DG DL W+ P
Sbjct: 514 DGFDLDWEYP 523
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 78.6 bits (185), Expect = 4e-15
Identities = 44/142 (30%), Positives = 69/142 (48%)
Frame = +3
Query: 93 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN 272
CYY + S R P D++P L CTH+L+ A + T+K+ EN H
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77
Query: 273 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 452
Y+ I LK+ P+L+ + VGG E ++ ++ + + R F SA+ +GFDG
Sbjct: 78 YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDG 137
Query: 453 IDLSWQLPKRKPKKIRSSIGSF 518
+DL W+ P + +S G F
Sbjct: 138 LDLDWEYPGMRGGSPKSDKGRF 159
Score = 72.5 bits (170), Expect = 3e-13
Identities = 42/143 (29%), Positives = 69/143 (48%)
Frame = +3
Query: 90 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 269
+CYY + S R P D++P L CTH+++ + + T+ M +N D D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462
Query: 270 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 449
Y+ I LK+ P+L+ + VGG E ++ ++ + + R F SA+ GFD
Sbjct: 463 -YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFD 521
Query: 450 GIDLSWQLPKRKPKKIRSSIGSF 518
G+DL W+ P + +S G F
Sbjct: 522 GLDLDWEYPGMRGGSPKSDKGRF 544
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 70.5 bits (165), Expect = 1e-12
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = +3
Query: 90 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAH 266
+CY+ + S R+ +A+ P D+ PA CTHL+Y A I Q + M N+ D+ +
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75
Query: 267 ANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGF 446
+ A LK++ P+L+ L VGG + ++ ++++ R F +S + + +GF
Sbjct: 76 PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGF 132
Query: 447 DGIDLSWQLP 476
DG+DL W+ P
Sbjct: 133 DGLDLDWEYP 142
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 59.7 bits (138), Expect = 2e-09
Identities = 37/129 (28%), Positives = 64/129 (49%)
Frame = +3
Query: 90 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 269
+CYY + + R A+ P +++P+L CTH++Y A + AD K+ N A
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAA 76
Query: 270 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 449
Y+ + +LK ++ L VGG + P + ++ + R F + A+L + FD
Sbjct: 77 MYKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFD 133
Query: 450 GIDLSWQLP 476
G+DL W+ P
Sbjct: 134 GLDLDWEYP 142
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +3
Query: 273 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 452
Y+ +LK + P L+ L VGG + ++ ++ + +R F +S++ + Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246
Query: 453 IDLSWQLP 476
DL W+ P
Sbjct: 247 FDLDWEYP 254
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 273 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 452
Y+ + +LK ++ L VGG + P + ++ + R F + A+L + FDG
Sbjct: 2 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58
Query: 453 IDLSWQLP 476
+DL W+ P
Sbjct: 59 LDLDWEYP 66
>SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)
Length = 172
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -3
Query: 535 FLMLCQKDPILERIFFGFLFGNCQDRSIPSKPYCSARRRAELVKAVRACGDSNKRLYFCG 356
+L +D E++F G +G P+ AR +VK+V + +Y C
Sbjct: 90 YLPYLDEDGTKEKVFNG-AWGRYLAFKRRIYPHVFARYIRIIVKSVFRSASIHVEIYGCV 148
Query: 355 SSVSSSPPTVKN 320
S +SSSPP +N
Sbjct: 149 SRLSSSPPPREN 160
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 16 PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 156
P P R R PT H K + T T R ++ +KHV +RT+
Sbjct: 316 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 362
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 16 PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 156
P P R R PT H K + T T R ++ +KHV +RT+
Sbjct: 983 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 1029
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 552 PVDDKESEHREGFTALVREM 611
P DDK +E R FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,041,578
Number of Sequences: 59808
Number of extensions: 362000
Number of successful extensions: 1198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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