Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_I08
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 56 1e-08
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 50 1e-06
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 48 5e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 46 2e-05
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 45 4e-05
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 38 0.004
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 37 0.007
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 33 0.091
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 32 0.21
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 1.5
At1g23270.1 68414.m02911 hypothetical protein 29 2.6
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 28 3.4
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 3.4
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 3.4
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 28 3.4
At4g37110.1 68417.m05256 expressed protein 28 4.5
At4g15075.1 68417.m02316 hypothetical protein 28 4.5
At1g13540.1 68414.m01587 expressed protein 28 4.5
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 27 5.9
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 5.9
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 23 6.4
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 27 7.9
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 27 7.9
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = +2
Query: 188 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 364
TD++ +L THL A ++A++Y++ N A + A T ++++ P ++
Sbjct: 21 TDIDSSLF--THLFCTFADLEAESYEITIATWN------QAPFHAFTETVQQRNPHVKTL 72
Query: 365 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRK 526
L++GG + +D + + +P +R +F S + +A YGF G+DL W+ P+ +
Sbjct: 73 LSIGGGNADKDA--FASMASNPDSRASFIQSTITVARSYGFHGLDLDWEYPRNE 124
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 49.6 bits (113), Expect = 1e-06
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = +2
Query: 188 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 364
TD++ +L THL A + + T ++ + N + T ++R+ P ++
Sbjct: 42 TDIDSSLF--THLFCAFADLNSQTNQVTVSSAN------QPKFSTFTQTVQRRNPSVKTL 93
Query: 365 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 517
L++GG D Y + +P +R +F +S++ +A YGF G+DL W+ P
Sbjct: 94 LSIGGG--IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP 142
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 47.6 bits (108), Expect = 5e-06
Identities = 29/101 (28%), Positives = 52/101 (51%)
Frame = +2
Query: 218 THLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTED 397
THL A + T +V + ++ +N+ I +K++ P ++ L++GG + D
Sbjct: 39 THLFCAFADLDPQTNSVVVSGAH---EQEFSNFTKI--VKKKNPHVQTLLSIGGRN--AD 91
Query: 398 PQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPK 520
+ + +P +R +F SA+ A Y FDG+DL W+ PK
Sbjct: 92 KSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYPK 132
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = +2
Query: 209 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVFLTVGGDD 385
S THL A I TY+++ + N + T ++R+ P ++ L++GGD
Sbjct: 45 SLFTHLFCAFADINTLTYQVIVSSRN------KPKFSTFTQTVRRRNPTVKTLLSIGGDF 98
Query: 386 DTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 517
+ + +P +R F +S++ LA GF G+DL+W+ P
Sbjct: 99 TYNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNWKYP 140
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 44.8 bits (101), Expect = 4e-05
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Frame = +2
Query: 107 SPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNEN 286
SPS++ K ++ E+Q + + P+ F THL A + A+++K+
Sbjct: 9 SPSAEVKASYWFPDG----ETQDPITSAETIPSALF-THLFCAFADLDANSHKVF----- 58
Query: 287 LDIDRAHAN-YRAITN-LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSA 460
+ +AH + T +K + PQ++ L++GG + + + + Q+R F +S
Sbjct: 59 --VSQAHEFIFSTFTETVKIRNPQVKTLLSIGGKNANNSA--FASMASNHQSRKTFIDSW 114
Query: 461 LLLAEQYGFDGIDLSWQLP 517
+ +A GF G+DL+W+ P
Sbjct: 115 IFIARSNGFHGLDLAWEYP 133
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 37.9 bits (84), Expect = 0.004
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 416 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPK 520
+ S R +F S + +A YGFDG+DL W+ P+
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPR 35
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 37.1 bits (82), Expect = 0.007
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Frame = +2
Query: 143 DSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRA 322
D KS E ++ P+ + F THL A + + T+++ N + +
Sbjct: 22 DGKSQSPECLSQGTPSSFIDSTLF-THLFCAFADVDSSTHEVTISAAN------SYQFSS 74
Query: 323 ITN-LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGID 499
T +K + ++ L++GG D D + + + R AF +S++ +A + F G+D
Sbjct: 75 FTETVKEKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLD 132
Query: 500 LSWQLP 517
L+W+ P
Sbjct: 133 LAWEYP 138
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 33.5 bits (73), Expect = 0.091
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +2
Query: 332 LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 511
+K + ++ L++GG D D + + + R AF +S++ +A + F G+DL+W+
Sbjct: 71 VKDKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWE 128
Query: 512 LP 517
P
Sbjct: 129 YP 130
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 32.3 bits (70), Expect = 0.21
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 416 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 517
++ + +R +F +S++ +A GF G+DL+W+ P
Sbjct: 79 IVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 105 HHLVAKAKSSATMTARAISEN-LKHVCCLRTWSLLFRSAPICCTNLPASKLT 257
H V K +AR + N + H C+ W + S P+C LPA LT
Sbjct: 200 HCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLT 251
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 210 RSAPICCTNLPASKLTHIKWFHSM 281
RS PIC T P+S +H KW H +
Sbjct: 13 RSCPICATPFPSSSSSH-KWTHQV 35
>At1g23270.1 68414.m02911 hypothetical protein
Length = 180
Score = 28.7 bits (61), Expect = 2.6
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = -3
Query: 516 GNCQDRSIPSKPYCSARRRAEL-VKAVRACGDSNKRLYFCGSSVSSSPPTVKNTRN*GNC 340
G D ++P+ P RR L V + S K+L +S++S P K R +
Sbjct: 36 GFTDDTALPTNPETRLRRLKSLPVSRTDSVSSSPKKLLSHSNSMASHPE--KKYRGNVSS 93
Query: 339 LFKFVIAR*LACARSMSKFSLSETILYVSAWMPADLYSRWVQNERAGSKSVGS 181
+ F I +C S + ET ++ + SR E +GSK +GS
Sbjct: 94 VSSFSIQVGKSCPLDSS---VEETQIFSKTKRNQSVKSRGGLGESSGSKRIGS 143
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P14714
Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 28.3 bits (60), Expect = 3.4
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = -3
Query: 450 VKAVRACGDSNKRLYFCGSSVSSSPPTVKNTRN*GNCLFKFVIAR*LACARSMSKFSLSE 271
V ++R GD+ + ++ SS R G C+ VIAR A + M + L
Sbjct: 987 VSSMRLYGDNLRLQQILSETLLSSIRFTPALR--GLCVSFKVIARIEAIGKRMKRVELEF 1044
Query: 270 TILYVSAWMPADLYSRWVQNERAGSKSVG 184
I++ + +P DL Q R G+ G
Sbjct: 1045 RIIHPAPGLPEDLVREMFQPLRKGTSREG 1073
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 185 PTDLEPALSFCTHLLYKSAG 244
PTD P+LSFC +Y S G
Sbjct: 321 PTDPNPSLSFCPSNIYSSTG 340
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 174 HVCCLRTWSLLFRSAPICCTNLPASKLTH 260
HV C+ TW L + P+C +NL + +H
Sbjct: 150 HVECIDTWLLSHSTCPLCRSNLLSGFSSH 178
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = +2
Query: 224 LLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQ 403
LL+ +A A Y + + L ID A +++ Q P LR + VG +
Sbjct: 547 LLFSTASCSARLYTGTPI-QLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMV 605
Query: 404 KYNLLLESPQARTAFTNSALLLAEQY 481
+ + LE+ R+ F ALL ++Y
Sbjct: 606 ESQIALEAGFGRSLFERLALLGHKKY 631
>At4g37110.1 68417.m05256 expressed protein
Length = 417
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 269 PFYMCQLGCRQICTADGCRTKEQAPSP*AAY-VLEIL*YSSCCH 141
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 228 PDWICPV-CRDICNCSFCRTKKGWLPTGAAYRKIHKLGYKSVAH 270
>At4g15075.1 68417.m02316 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 168 LKHVCCLRTWSLLFRSAP 221
L++ CCL+T ++LF+S P
Sbjct: 126 LRNACCLKTATILFKSTP 143
>At1g13540.1 68414.m01587 expressed protein
Length = 381
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 350 QLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 448
+L V +GGDD T DP + +L+ P + +
Sbjct: 65 KLAVTFNIGGDDSTRDPVVFIPVLDKPLSSNCY 97
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 174 HVCCLRTWSLLFRSAPICCTNLPAS 248
HV C+ W L S P+C LP+S
Sbjct: 282 HVRCIVPWLELHSSCPVCRFELPSS 306
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 174 HVCCLRTWSLLFRSAPIC 227
H+CCL W L S P+C
Sbjct: 162 HLCCLDAWLKLNGSCPVC 179
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 23.0 bits (47), Expect(2) = 6.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 206 LSFCTHLLYKSAGIQADTYKMVSLNENLDIDR 301
LS C HLL S G+ A+ +E LD+++
Sbjct: 542 LSLCKHLL--SEGMGAEAASQAFNSEKLDMEK 571
Score = 22.6 bits (46), Expect(2) = 6.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 101 PASPSSQSKVLCYYDSKSYIRESQARMLPTDLE 199
P+ P SQS C+ SK +RE ++ D E
Sbjct: 486 PSQPLSQSFDPCFNTSKLDLREDESSSGGLDAE 518
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 402 CGSSVSSSPPTVKNTRN*GNCLF 334
CG S SSSP +V + +N CLF
Sbjct: 177 CGGSPSSSPASVLSNKNNRCCLF 199
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 54 SPSPGYWR*RLRLPTTQHHLV-AKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICC 230
SP+ G W + ++P+ H L+ S T+ ARA ++ + LL + C
Sbjct: 578 SPAAGMWFSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE-----EQKDLLAHVILVSC 632
Query: 231 TNLPASKLTHI 263
+ L K+ HI
Sbjct: 633 STLALEKVQHI 643
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,947,112
Number of Sequences: 28952
Number of extensions: 212593
Number of successful extensions: 665
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -