Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I06
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    27   1.2  
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac...    26   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   2.1  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   2.1  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   2.1  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   2.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   4.9  

>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 129 IFKGECRAKFPSYGYNTSTKTCELFYYGGCNGNSNRFDTQLAC 257
           +F  E R +F    YN  +K   L  +G  + N  +F+T   C
Sbjct: 246 LFIDEKRDEFQERLYNDYSKESHLLQHGSHSFNGKQFETSFNC 288


>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
           Fba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 96  VNEPPPECLQPIFKGECRAKFPSYGYNTSTKTCELFYYGGCNGNSNRFDTQLAC 257
           V +P    LQP   G+ +A        T+ K     ++GG   + N F T + C
Sbjct: 227 VYKPGNVKLQPALLGQHQAYVKEQLKTTNDKPVFFVFHGGSGSSVNEFRTGIKC 280


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 132  FKGECRAKFPSYGYNTSTKTCELFYYGGCNGNSNRFDTQLACEEACNV 275
            F+ + R  FPS+   + ++   L  Y  C G +N  D        CNV
Sbjct: 951  FEADRRHLFPSWVKPSDSEPPPLLVYKWCQGINNLTDVWETSNGECNV 998


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +3

Query: 48  CVILLFIFIVHSVICSVNEPPPECLQPIFKGECRAKFPSYGYNTSTKT 191
           C+I+  IF  H++       P     P F+ EC A   +   N    T
Sbjct: 252 CLIIADIFQFHNIYAMTTNAPNLLQDPDFQRECTAYVSTNSSNAKNVT 299


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 160 GNFALHSPLKMGCRHSGGGSLTLQ 89
           G FA+  P    C +SGGGS  L+
Sbjct: 331 GTFAVIGPNAKVCNYSGGGSANLK 354


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 132 FKGECRAKFPSYGYNTSTKTCELFYYGGCNGNS 230
           F+GECR+K+    +N  ++T  L   G    +S
Sbjct: 290 FEGECRSKYNERTFNIFSETFSLLPLGSLISDS 322


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 162 SYGYNTSTKTCELFYYGG 215
           S+GYN S+   + FYY G
Sbjct: 60  SFGYNASSSLIDDFYYKG 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,512
Number of Sequences: 5004
Number of extensions: 26842
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)