Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I06
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377...    27   4.6  
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667...    27   6.1  
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611...    26   8.1  
08_01_0843 - 8276619-8278991                                           26   8.1  
04_03_0609 + 17957124-17957465                                         26   8.1  

>03_05_1019 +
           29736644-29736709,29737156-29737515,29737595-29737735,
           29737912-29738044,29738344-29738457,29738553-29738701,
           29740815-29740907,29741019-29741079,29741180-29741512,
           29742149-29742224,29742322-29742421,29743300-29743369,
           29743987-29744082,29744355-29744402,29744427-29744658,
           29745186-29745246,29745265-29745375
          Length = 747

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +3

Query: 126 PIFKGECRAKFPSYGYNTSTKTCELFYYGGCNGNSNRFDTQLA-CEEACNVH 278
           P F G C AK   +G   +   CE      C       D   A C+E C++H
Sbjct: 562 PGFNGSCPAKCTGHGICKANGICE------CESGWTGIDCSTAVCDEQCSLH 607


>08_02_1605 - 28166338-28166418,28166496-28166567,28166655-28166771,
            28166846-28166956,28167077-28167252,28167340-28167421,
            28167662-28167808,28167887-28168252,28168558-28168741,
            28169104-28169213,28169452-28169508,28169589-28169600,
            28169899-28169961,28170010-28170057,28170166-28170246,
            28170326-28170389,28170661-28170686,28170782-28170868,
            28170942-28170969,28171194-28171255,28171364-28171576,
            28171667-28171774,28171948-28172022,28172136-28172249,
            28172597-28172644,28172688-28172767,28172974-28173049,
            28173287-28173427,28173685-28173762,28175100-28175204,
            28177061-28177147,28177287-28178579
          Length = 1463

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 189  TCELFYYGGCNGNSNRFDTQLACEE 263
            TCE FY   C+ N+ +    L C+E
Sbjct: 997  TCEDFYAAMCDANNTQLPNFLQCQE 1021


>10_08_0745 -
           20260136-20260236,20260890-20260937,20261025-20261165,
           20261358-20261603,20261744-20262583,20263253-20263286
          Length = 469

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = +1

Query: 100 MNPHQNVYNPFLKVNAEQNSQVTDIIPQRKRANCSITAAATVTPIVSTPNL 252
           M P+   Y+P L      N      +  +  ++CSI  A  V  ++  P +
Sbjct: 77  MYPNYTSYDPVLTGKCHVNFSALSYMMDKTASDCSIPLAPLVADVICCPQV 127


>08_01_0843 - 8276619-8278991
          Length = 790

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 144 CRAKFPSYGYNTSTKTCELFYYGGCNGNSNRFDTQL 251
           C   F     N ST+ C     GGC GNS   D  L
Sbjct: 318 CLPGFEFLSANQSTQGCWRAQTGGCTGNSPNGDIGL 353


>04_03_0609 + 17957124-17957465
          Length = 113

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 255 TQVGCRNDW--SYRCSRRNRTIRTFS 184
           T  GC+ D   S RCS   RT+ TF+
Sbjct: 62  TTAGCKRDGGGSVRCSATTRTVSTFA 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,908,621
Number of Sequences: 37544
Number of extensions: 164243
Number of successful extensions: 334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)