Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I05
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.70 
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   1.6  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   5.0  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.0  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   6.5  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   8.7  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 214 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 321
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +3

Query: 279 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 428
           P  F ++D L  +YR+K +D   HD K+    ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 291 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTY 461
           +NMD LL  Y TK  D      + +NY ++     Y  + N  ++F+   +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 300 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 419
           D  + I R K   G + HD   +NY ++   E++ +  N S
Sbjct: 83  DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -1

Query: 437 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 342
           + KE   I+  +++I ++FLF N +++ +C VKN
Sbjct: 22  VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 389 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 285
           FLF N   N SLC  ++T   F  +    S+HI  E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 186 NEGQFL-YAYYIAVIQRNDTHG 248
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,331
Number of Sequences: 5004
Number of extensions: 50972
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)