Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I05
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     28   5.0  
08_01_0914 + 9010613-9013316,9013537-9013748                           28   5.0  
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   6.7  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   6.7  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    28   6.7  
01_06_0693 - 31280108-31281271                                         28   6.7  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    27   8.8  

>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 129 YAKDFETFYKSAAFARVHLNEGQFLYAYYIAV 224
           Y KD   FY  +   +  + EG+FL ++Y+ +
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFYVQI 728


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 404 IHILLFLFYNSIINSLCIVKNTVLHFSAINLK*SVHINEELWIN 273
           +H+L+F    ++I+S+C +  T   F    +K +V  NE L++N
Sbjct: 656 LHVLIFCIVGTLISSMCCM--TAYCFIKRKMKLNVVDNENLFLN 697


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 321 RTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE--QRLTYLTEDIGFN 485
           R   Q G + D   I YGI     +++Y+   S+  +  NE+     T  +ED+G N
Sbjct: 284 RIHRQKGHVEDHLYI-YGIASTYTRWIYHGEQSDAGINENEDHLDEHTSFSEDVGIN 339


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 176 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 30
           +S +G +   FK+ +++E   K   +   L  EDG++++  K  DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 444 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 557
           E+ + +    IG   Y  Y   + PF       GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318


>01_06_0693 - 31280108-31281271
          Length = 387

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +3

Query: 288 FVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF-----LYNNEEQR 452
           ++ MDT+  ++R  +++G+  D +A+N  +VK   Q ++  +    F     +Y  E   
Sbjct: 196 YMYMDTVSALFRQMLEEGVPPDTRALNV-LVKGYAQSLHLNDALRVFHQMRPVYGCEPDA 254

Query: 453 LTY 461
           LTY
Sbjct: 255 LTY 257


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 154 TRVPLSL-VCT*MRDSSCTHIILQLSSAMILMDSFYQLLMK 273
           T+ P S  V T +  S+CTH   QLSSA +L     +  +K
Sbjct: 65  TQCPCSFAVATSISSSTCTHFTPQLSSAHLLSSQLKEKELK 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,883
Number of Sequences: 37544
Number of extensions: 290470
Number of successful extensions: 632
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)