Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I04
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   1.8  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   3.1  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   4.1  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   5.5  
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    25   5.5  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    25   5.5  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    24   9.6  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 57  KHTREKILFRVPSEFIVFDY*KNLVVKKMSV 149
           ++TRE  L ++ +E ++ DY   LVV+K+++
Sbjct: 853 EYTREGALVKIFNESVLEDYPAQLVVEKIAI 883


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 377 PSTSTRNSLISIKSVSRTADRVLEVHNRYDI 285
           P T+ RNS  ++ SVS  +D+   + + Y++
Sbjct: 136 PDTTRRNSTSNLSSVSTNSDKSRTIGSNYNM 166


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 20  TVQLSSRLTNRPQTHTRKNSIPG 88
           T +L +R  N  Q H+  NS+PG
Sbjct: 255 TCKLYARFLNNAQMHSLANSLPG 277


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 359 NSLISIKSVSRTADRVLEVHNRY 291
           +S +S + VS T +R+L+VH  Y
Sbjct: 257 HSFLSCRLVSPTWNRILDVHTSY 279


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 225 SIPERTSPGRRAAIRRLLNFSR 160
           ++P+R  P R + IRR  N S+
Sbjct: 128 TVPKRLGPKRASKIRRFFNLSK 149


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 225 SIPERTSPGRRAAIRRLLNFSR 160
           ++P+R  P R + IRR  N S+
Sbjct: 128 TVPKRLGPKRASKIRRFFNLSK 149


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 371 TSTRNSLISIKSVSRTADRVLEV 303
           TST NS IS K  +  A+ +LEV
Sbjct: 682 TSTINSKISEKQENNVAETILEV 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,348
Number of Sequences: 5004
Number of extensions: 31429
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)