Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_I04
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 31 0.32
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 30 0.56
02_05_1327 - 35718908-35719270,35719537-35719953,35720183-35720557 30 0.56
09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435... 30 0.74
02_02_0578 + 11745811-11746013,11749902-11750241,11750325-117505... 30 0.74
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 29 1.7
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 29 1.7
10_08_1022 + 22337332-22339398 28 3.0
06_03_1368 - 29612463-29612638,29613135-29613222,29613334-296134... 28 3.0
08_02_1559 - 27873345-27873407,27873549-27873830,27874162-278742... 27 3.9
05_03_0586 + 15782645-15782721,15782781-15783405 27 3.9
03_06_0316 + 33091194-33091370,33091451-33092155 27 5.2
02_02_0607 - 12088810-12089105,12089200-12090208 27 5.2
01_06_0809 - 32137202-32138128,32138247-32138631,32139503-321396... 27 5.2
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 27 6.9
03_06_0473 - 34181212-34181430,34181512-34181735,34181812-341819... 27 6.9
09_06_0315 - 22246879-22247643,22247722-22247862,22248509-222485... 26 9.1
03_02_0447 - 8576656-8576721,8577771-8577821,8577939-8578043,857... 26 9.1
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 31.1 bits (67), Expect = 0.32
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = -2
Query: 242 PRSSRVRFPNEHRQADEQQYA 180
PR +++R PN+H QA+E+QY+
Sbjct: 695 PRIAQMREPNQHAQAEERQYS 715
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 30.3 bits (65), Expect = 0.56
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 263 PRLPGCKPRSSRVRFPNEHRQADEQQYA 180
P + PR +++R PN+H Q +E+QY+
Sbjct: 471 PDIGNNSPRIAQMREPNQHAQTEERQYS 498
>02_05_1327 - 35718908-35719270,35719537-35719953,35720183-35720557
Length = 384
Score = 30.3 bits (65), Expect = 0.56
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3
Query: 159 SAKNSATCVLLLVCLAMFVRESNARTPWLAPG*PGS 266
+AKN LLL A V E AR WLAPG PG+
Sbjct: 341 AAKNPDLLPLLLAAAACTVGEE-ARRRWLAPGSPGN 375
>09_02_0107 +
4354470-4354589,4355058-4355156,4355292-4355596,
4356101-4356278,4356368-4356481,4356543-4356674,
4356784-4356888
Length = 350
Score = 29.9 bits (64), Expect = 0.74
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -2
Query: 242 PRSSRVRFPNEHRQADEQQYA 180
PR +++R PN+H Q +E+QY+
Sbjct: 86 PRIAQIREPNQHAQIEERQYS 106
>02_02_0578 +
11745811-11746013,11749902-11750241,11750325-11750543,
11751043-11751102,11751262-11751417,11751518-11751611,
11751914-11751927
Length = 361
Score = 29.9 bits (64), Expect = 0.74
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 250 PGSRGLLPNPGGMSYRL*TSKTLSAVRETDLIEIRLFRVLVDGI 381
PGS LLP PG Y T+ + VR DLI R + V ++G+
Sbjct: 107 PGSNILLPKPGFPLYESRTTFSNLEVRHFDLIPERGWEVDLEGV 150
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -2
Query: 242 PRSSRVRFPNEHRQADEQQYA 180
PR +++R PN+H Q +E+QY+
Sbjct: 725 PRIAQMREPNQHVQTEERQYS 745
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 187 CCSSAWRCSFGNRTRELRGLHPGSRGLLPNPGGMSYR 297
CC + S+ ELR PGS G+ P+P G S R
Sbjct: 243 CCFHSSHFSYS----ELRDTKPGSNGVSPSPSGRSRR 275
>10_08_1022 + 22337332-22339398
Length = 688
Score = 27.9 bits (59), Expect = 3.0
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 377 PSTSTRNSLISIKSVSRTADRVLEVHNRYDI--PPGFGKRPRLPGCKPRSSRVRFPNEHR 204
PST T S S V EV + + PP KRPR G KP + R P H
Sbjct: 457 PSTGTGAPAKSESDHSDLEASVREVESSRVVAPPPEAEKRPRKRGRKPANGREE-PLNHV 515
Query: 203 QADEQQ 186
+A+ Q+
Sbjct: 516 EAERQR 521
>06_03_1368 -
29612463-29612638,29613135-29613222,29613334-29613474,
29613561-29613595,29613990-29614054,29614286-29614335,
29614417-29614521,29614608-29614688,29614771-29614852,
29614941-29614995,29615111-29616164,29617202-29617289,
29617379-29617485,29617568-29617686,29617784-29617994
Length = 818
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 307 KFIIGMTFHLDSVKDPGYPGASHGVLAFDS 218
KF I + F+ D++ P Y SHG++AF S
Sbjct: 651 KFWISVLFY-DNLLQPKYDAISHGIIAFVS 679
>08_02_1559 -
27873345-27873407,27873549-27873830,27874162-27874263,
27874402-27874872
Length = 305
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 338 SVSRTADRVLEVHNRYDIPPGFGKRPRLPGCKPRSSRVRFPNEHRQADEQQYAG 177
S AD+ +E+ NRYDI G+ + PR SRV P + Y G
Sbjct: 176 STIEEADKAIEMLNRYDIN---GRLLNVNRAAPRGSRVERPPRQFAPAFRAYVG 226
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 163 RKIQQPAYCCSSAWRCSFGNRTRELRGLHPGS-RGLLP 273
R++++P CCSSA + G+ ++ G PG RG LP
Sbjct: 138 RRLERPIVCCSSACWKAVGHDDQQC-GHCPGQRRGFLP 174
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 380 IPSTSTRNSLISIKSVSRTADRVLEVHNRYDIPPGFGKRPRLPGCKPRSS 231
+PS + L+ IK + A ++ +V N Y +PP P KP ++
Sbjct: 91 LPSNFRKQLLVQIKKLV-AAGKLTKVKNSYKLPPTRAPAAAKPKAKPAAA 139
>02_02_0607 - 12088810-12089105,12089200-12090208
Length = 434
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 341 KSVSRTADRVLEVHNRYDIPPGFGKRP 261
+S RT + + + RY +P GFG P
Sbjct: 105 RSTLRTQESLAGIRARYSVPEGFGLHP 131
>01_06_0809 -
32137202-32138128,32138247-32138631,32139503-32139607,
32139737-32139770,32139856-32140098,32140187-32140247
Length = 584
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = -2
Query: 275 FGKRPRLPGCKPRSSRVRFPNEHRQADEQQYAGC---*IFRGEKNHRHFF 135
FG L P S ++P R ++ GC ++ E H HFF
Sbjct: 90 FGGAATLSSTDPSSGTCKYPATARDKHRNRHGGCRHRHRYKHEHEHEHFF 139
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 261 PATRVQATEFSRSIPERTSPGRRAAIRRLL 172
PA+R++A + P+ +PGRR+ RR L
Sbjct: 136 PASRLRAPARASPSPDAQTPGRRSRPRRCL 165
>03_06_0473 -
34181212-34181430,34181512-34181735,34181812-34181973,
34182071-34182167
Length = 233
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 146 GDFFLREKFSNLRIAARLPGDVRSGIERENSVACTRVAGVF 268
GDF EKF+ + + L G+ S EN VA + AGV+
Sbjct: 87 GDF---EKFTRVTMILPLTGEQYSDKVTENCVAAWKAAGVY 124
>09_06_0315 -
22246879-22247643,22247722-22247862,22248509-22248561,
22248755-22248919,22249685-22249799,22249937-22250025,
22250578-22250608
Length = 452
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 344 IKSVSRTADRVLEVHNRYDIPPGFGKR 264
+K+V+RTA+ VLE+ ++ D F R
Sbjct: 294 VKNVARTANHVLEMQDKQDAAANFVAR 320
>03_02_0447 -
8576656-8576721,8577771-8577821,8577939-8578043,
8578955-8579059
Length = 108
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 263 PRLPGCKPRSSRVRFPNEHRQADEQ 189
P L PR+ R R P+E QAD++
Sbjct: 15 PHLVAAPPRAGRARRPSEPAQADKK 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,598,197
Number of Sequences: 37544
Number of extensions: 204410
Number of successful extensions: 522
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -