Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I04
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)                   29   1.3  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      27   5.3  
SB_35365| Best HMM Match : Toxin_24 (HMM E-Value=1.9)                  27   7.1  
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)                 26   9.3  
SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  

>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 157 SPRKIQQPAYCCSSAWRCSFGNRTRELRGLHPGSRGLLPNP 279
           SP +   PA   S A   S   R    RG+ P SRG  P P
Sbjct: 509 SPARTTSPARITSPARASSPAGRASPARGVSPASRGKRPAP 549


>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
          Length = 213

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 163 RKIQQPAYCCSSAWRCSFGNRTRELRGLHPGSRGLLPNPGG 285
           RK +  A CC  AWR  + + ++ +R    G  G L +P G
Sbjct: 153 RKERCSALCCVGAWRFIWDDSSKLVRANREGGPGPLGHPPG 193


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 172  QQPAYCCSSAWRCSFGNRTRELRGLHPGSRGLLPNPG 282
            Q P +   +AWR    N   +   +HP S+   P PG
Sbjct: 2106 QLPPFAQMNAWRAQMQNNNSQANMMHPNSQAQQP-PG 2141


>SB_35365| Best HMM Match : Toxin_24 (HMM E-Value=1.9)
          Length = 196

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 187 CCSSAWRCSFGNRTR 231
           CC  +WRC   N+ R
Sbjct: 93  CCRDSWRCEIANKAR 107


>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
          Length = 315

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 299 NRYDIPPGFGKRPRLPGCKPRSS 231
           N Y  PP  G RP  PG  P SS
Sbjct: 52  NNYQPPPQPGYRPPYPGYPPTSS 74


>SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 245 KPRSSRVRFPNEHRQADEQQYAGC*IFRGEKNHRHFFNH 129
           KP+S+  R     +     +Y GC + R + N  HF NH
Sbjct: 206 KPKSNHKRVMRIIQTDGHVEYPGCTMGRRQCNWAHFDNH 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,987
Number of Sequences: 59808
Number of extensions: 244979
Number of successful extensions: 598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)