Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I04
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical ...    28   2.0  
AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine re...    27   3.5  
U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical
           protein Y66D12A.11 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +3

Query: 129 VVKKMSVIFFSAKNSATCVLLLVCLAMFVRESN 227
           +++KM  IF+S+++S   +++LV L +F   S+
Sbjct: 299 MIRKMERIFYSSESSCWLIVVLVMLTIFAYRSS 331


>AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine
           receptor, class w protein66 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 93  SEFIVF-DY*KNLVVKKMSVIFFSAKNSATCVLLLVCLAMFV 215
           S+F  F D  K ++VK  + IFF A+ S      L C+A+F+
Sbjct: 8   SDFKDFSDSNKKILVKIANFIFFLAEKSKNAYNWLACVAVFI 49


>U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical
           protein C30B5.1 protein.
          Length = 706

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 254 VAGVFYRIQV--ECHTDYELLKLCQR 325
           V G+ YRI V  ECH   E++ LC R
Sbjct: 115 VRGIKYRIPVAIECHLCNEMMNLCLR 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,548
Number of Sequences: 27780
Number of extensions: 193371
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)