Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I04
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40240.1 68415.m04948 pentatricopeptide (PPR) repeat-containi...    29   1.4  
At5g44820.1 68418.m05493 expressed protein similar to unknown pr...    27   4.4  
At4g29420.1 68417.m04201 F-box family protein contains F-box Pfa...    27   4.4  
At4g19970.1 68417.m02924 expressed protein similar to GI:2827651...    27   5.8  
At4g23190.1 68417.m03345 protein kinase family protein contains ...    26   7.6  

>At2g40240.1 68415.m04948 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 351

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 267 KTPATRVQATEFSRSIPERTSPGRRAAIRRLLN 169
           K P  R + TEF + I E  S G    +RRLLN
Sbjct: 31  KIPPGRRKTTEFDKLINEAGSSGDFETVRRLLN 63


>At5g44820.1 68418.m05493 expressed protein similar to unknown
           protein (pir||T04881)
          Length = 367

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 103 INSLGTRNRIFSRVCLWSVCQTTRQLYCVC 14
           I+ +G + R F  V     CQT+R +  VC
Sbjct: 290 ISEIGIQMRFFDTVYFGGFCQTSRDINLVC 319


>At4g29420.1 68417.m04201 F-box family protein contains F-box
           Pfam:PF00646 ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 446

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 112 SNTINSLGTRNRIFSRVCLWSVCQTTRQLYCVCP 11
           S T+NSL    R  + +C WS    +R +  V P
Sbjct: 29  SKTLNSLSREVRAVNLICTWSRYLKSRSIVVVTP 62


>At4g19970.1 68417.m02924 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544,  GI:10764853,
           GI:10764852 from [Arabidopsis thaliana]; predicted
           protein PATCHX:E326963
          Length = 715

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 103 INSLGTRNRIFSRVCLWSVCQTTRQLYCVC 14
           ++ +G + R F  V     CQT+R +  VC
Sbjct: 640 VSEIGIQMRFFDTVYFGGFCQTSRDINLVC 669


>At4g23190.1 68417.m03345 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 667

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 263 PRLPGCKPRSSRVRFPNEHRQADE 192
           PRLPG  PRS +++  +E  ++D+
Sbjct: 634 PRLPGFFPRSRQLKLVSEGSESDQ 657


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,518,066
Number of Sequences: 28952
Number of extensions: 166748
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)