Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I01
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    31   0.15 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   0.47 
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   4.4  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   5.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   5.8  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 298 TFFFKLYHRFVTYNLLKRTGKKLSKYYILFEYIHIEHLIMK 176
           T+  KL+++ +TY ++ RT   L+KY     Y+ +  L  K
Sbjct: 226 TYIQKLFYQTITYQIISRTSYSLNKYGENISYLRLSLLHCK 266



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 169 KRLYHRFVTYNLLKRTGKKLSKYYILFEYIHIEHLIMK 56
           ++L+++ +TY ++ RT   L+KY     Y+ +  L  K
Sbjct: 229 QKLFYQTITYQIISRTSYSLNKYGENISYLRLSLLHCK 266



 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -3

Query: 406 KLYHRFVT*NLLRRTGKKLSKY-----YLVFEYIHIEHLLMTFF 290
           KL+++ +T  ++ RT   L+KY     YL    +H +  L T F
Sbjct: 230 KLFYQTITYQIISRTSYSLNKYGENISYLRLSLLHCKEALKTRF 273


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +2

Query: 152  PVVESFKNL-------HY*MFNMDIFKQNIIFAEFLAGSFQQIVSNEPVVEFKKKRH 301
            P++E FK L       H  + NM +F         ++GSF  +V N  V+EF+ KR+
Sbjct: 2800 PILERFKTLFISFTEEHRKIINMMVFTT----PSLMSGSFSLLVKNPKVLEFENKRN 2852


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 307 LLMTFFFKLYHRFVTYNLLKRTGKKLSKYYILFEY 203
           + ++F F  Y R+ TY  L RT      YY L  +
Sbjct: 394 IFVSFLFVYYMRYCTYKSLMRTQFAPHYYYALVPF 428


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/52 (21%), Positives = 24/52 (46%)
 Frame = -3

Query: 325 YIHIEHLLMTFFFKLYHRFVTYNLLKRTGKKLSKYYILFEYIHIEHLIMKIF 170
           ++H   +    FF LYH+ +  + L      +S +++ F ++    L   +F
Sbjct: 146 HVHFHLIPFINFFLLYHQIILSHSLFHISHLISFHFLFFSFLSFPLLSFILF 197


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 560 STTSTFNKGQYFKTLPPVRNLKSAENRQET 471
           +T S+ +  +Y  TL  +R+LKS+ NR+ T
Sbjct: 612 TTASSDSFRKYANTLNDLRHLKSSRNRKAT 641


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 29   EPVVESFKNLHY*MFNMDIFKQNIIFAEFLAG-SFQQIVSNEPVVESFKNLHY*MFNMDI 205
            E ++     L Y  +  DI K+ I+  E L G    Q +        FK     M  +D 
Sbjct: 1758 EQLIPRSSILVYESYIRDIEKEIIVLQERLNGIELSQQLPKGYFGYFFKTNRVEMEVLDS 1817

Query: 206  FKQNIIFAEFLAGS 247
            FKQ +   +FLAG+
Sbjct: 1818 FKQQVAKLQFLAGA 1831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,350
Number of Sequences: 5004
Number of extensions: 46392
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)