Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I01
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896...    31   0.83 
11_06_0541 + 24771145-24775479                                         29   3.4  
11_01_0528 - 4148737-4149483,4149618-4150147,4150238-4150736,415...    27   7.7  

>07_01_1034 -
           8962703-8962748,8962831-8962991,8963068-8963905,
           8963991-8964128,8964206-8964355,8964436-8964683,
           8964825-8964953,8965735-8965960,8966909-8966975,
           8967488-8967551,8968902-8969000,8969074-8969157,
           8969240-8969321,8969412-8969460,8969664-8969769,
           8970650-8970734,8970814-8970917,8970994-8971109,
           8971187-8971373,8972005-8972113,8972633-8972761,
           8973365-8973449,8973812-8973947,8974078-8974230,
           8974488-8974634,8974801-8974941,8975580-8975903
          Length = 1400

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 253 LKRTGKKLSKYYILFEYIHIEHLIMKIFKRLYHRFVTYNLLKRT-GKKLSKYYILFEYIH 77
           LKR  K   + +  F+Y   +H ++ + K L+         K T G   S  Y LF+Y+ 
Sbjct: 502 LKRCRKMQFELHEGFQYSEFQHKVLSVAKNLWREVCINVTFKSTDGFVFSPEYALFDYLE 561

Query: 76  I 74
           I
Sbjct: 562 I 562


>11_06_0541 + 24771145-24775479
          Length = 1444

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 373  LRRTGKKLSKYYLVF---EYIHIEHLLMTFFFKLYHRFVTY 260
            L   G+ L KY L F   E+ H+++LL   F K++   +T+
Sbjct: 1190 LSEVGETLEKYMLTFKKDEFQHLKYLLAEGFSKIFETNITF 1230


>11_01_0528 -
           4148737-4149483,4149618-4150147,4150238-4150736,
           4152041-4152043
          Length = 592

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 259 NLLKRTGKKLSKYYILFEYIHIEHLIMKIFKRLYHRFV-TYNLLKRTGKKLS 107
           NLL+ T ++ +  ++  E  HIE     + K LYHRF+   N L R    L+
Sbjct: 6   NLLEVTAERNTVLHVAAEKGHIE-----LIKELYHRFIKDNNFLSRRNSALN 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,250
Number of Sequences: 37544
Number of extensions: 221210
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)