Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I01
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR ...    31   0.53 
At1g43720.1 68414.m05023 hypothetical protein                          29   1.6  
At5g24420.1 68418.m02878 glucosamine/galactosamine-6-phosphate i...    28   4.9  
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu...    28   4.9  
At1g63240.1 68414.m07148 expressed protein                             27   6.5  
At2g26910.1 68415.m03228 ABC transporter family protein similar ...    27   8.6  

>At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 907

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -3

Query: 358 KKLSKYYLVFEYIHIEHLLMTFFFKLYHRF---VTYNLLKRTGKKLSKYYILFEYIHIEH 188
           KK+ +  +V ++IH++HLL+  +      F   +T+  L   G +     IL + +H++ 
Sbjct: 740 KKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKG 799

Query: 187 LIM 179
           +I+
Sbjct: 800 VIL 802



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -3

Query: 238 KKLSKYYILFEYIHIEHLIMKIFKRLYHRF---VTYNLLKRTGKKLSKYYILFEYIHIEH 68
           KK+ +  I+ ++IH++HL++ ++      F   +T+  L   G +     IL + +H++ 
Sbjct: 740 KKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKG 799

Query: 67  LIM 59
           +I+
Sbjct: 800 VIL 802


>At1g43720.1 68414.m05023 hypothetical protein 
          Length = 314

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 264 VTNRW*SLKKNVINKCSIWIYS 329
           +  RW   K+N  NKCSIWI+S
Sbjct: 286 ILTRW--FKRNDSNKCSIWIFS 305


>At5g24420.1 68418.m02878 glucosamine/galactosamine-6-phosphate
           isomerase-related contains weak similarity to
           Swiss-Prot:O95336 6-phosphogluconolactonase (EC
           3.1.1.31) (6PGL) [Homo sapiens]
          Length = 252

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 288 LNSTTGSLLTIC*KEPARNSANIIFCLNISI 196
           +NST  +L+ IC K PA++ A I+   N+S+
Sbjct: 199 INSTLYNLMAICDKAPAKSVAEIMKHNNLSL 229


>At4g38180.1 68417.m05390 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family and PF04434:
           SWIM zinc finger
          Length = 788

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 196 IEHLIMKIFKRLYHRFVTYNLLKRTGKKLSKYYI 95
           I   IM +F    HRF  +++LK+  +KLS  ++
Sbjct: 370 IRAAIMHVFPGARHRFCKWHILKKCQEKLSHVFL 403


>At1g63240.1 68414.m07148 expressed protein
          Length = 548

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 559 LPPVLLIKVNILRLYHRFVT*NLLRTGKKLSKYYLVFEYINIEHL 425
           LP   +    +L+   +  T   LRTGKKLS    V EYI +E +
Sbjct: 18  LPVGWIAHSTVLKRGRQTRTYTQLRTGKKLSTKDQVLEYIKMEKI 62


>At2g26910.1 68415.m03228 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1420

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = +2

Query: 215 NIIFAEFLA-----GSFQQIVSNEPVVEFKKKR 298
           NI+F  FLA     G FQ +VS E + E +KKR
Sbjct: 748 NILFTLFLAHLNPWGKFQAVVSREELDEREKKR 780


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,709
Number of Sequences: 28952
Number of extensions: 208376
Number of successful extensions: 408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)