Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H24
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 29 0.25
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 0.75
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 0.99
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 1.3
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 5.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 5.3
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 5.3
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 7.0
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 7.0
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 7.0
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 9.3
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 24 9.3
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 24 9.3
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 29.5 bits (63), Expect = 0.25
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 131 LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEI 310
L IF+K +++ ++ FES K+ FH ++ W++ D EEV D+QR +
Sbjct: 247 LQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDF--EEVEGDFQRICHL 304
Query: 311 VARHVLGAA 337
R ++ A
Sbjct: 305 YERCLITCA 313
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 0.75
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 125 RFLDIFEKTFVQSLQKGKFESYG-KKID-FHDEKA 223
+FL+I+ +T + L G E G KK++ +HD KA
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKA 640
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 0.99
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 144 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL-- 317
K+L + K + + + +T+ R+ L +T + +C K+ + I DL+ SL
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTC 257
Query: 318 -AMCSVQHLNHSTSTPSCPVRLTFT 389
A +Q + TS+ S PV L T
Sbjct: 258 FASDILQTVPEYTSSQSSPVLLPAT 282
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 44 LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 136
L+ SYY PF DN ++ V YEA + +
Sbjct: 20 LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 143 EKTFVQSLQKGKFESYGKKIDFHDEKAIN 229
EKT V+S+ K + + G DFH E A N
Sbjct: 12 EKTHVESIVKFEDSNRGTITDFHIETANN 40
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 5.3
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = +3
Query: 168 RKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNH 347
RK R+ ++ + + L + IC Q I L + C L H
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKH 1122
Query: 348 STSTPSCPVRL 380
S+S P C +L
Sbjct: 1123 SSSCPMCKTKL 1133
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 305 EIVARHVLGAAPKPFDKHTFMPSALDFYQNRTSRPCI 415
EI R + P PF+ P L+ Y NR +PC+
Sbjct: 104 EISIRSIPPELP-PFELIATDPFTLEAYTNRIGKPCL 139
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 302 YEIVARHVLGAAPKPFDKHTFMPSALDFY 388
Y +ARH L + FD HTF + FY
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY 211
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 215 EKAINFVGNYWQENADLYEEEVTKDYQRSYEIVARHVLG 331
+K +N N W L+E+E+ + + +++ AR V G
Sbjct: 131 QKILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQG 169
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 7.0
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 92 NLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 271
NL+S + Y + + +++ S GK+ Y ++ + D + N G Y + N Y
Sbjct: 161 NLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNN---YR 217
Query: 272 EEVTKDYQRSY 304
+ + Y+ SY
Sbjct: 218 DRDSNRYRNSY 228
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 7.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 222 QLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTP-SCPVRL 380
+L S TI P+C++ K + +N L+L+ + L TS P CP++L
Sbjct: 228 ELNASVTISG-IPVCIRSKEKMFLNPDCALTLSFICI-FLAQYTSIPLPCPLQL 279
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 125 RFLDIFEKTFVQSLQKGKFES 187
RF+DIFE+TF S + KF S
Sbjct: 528 RFIDIFEQTF-SSKKNAKFIS 547
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 245 WQENADLYEEEVTKDYQRSYE 307
WQ++ EEE+ + YQ+S++
Sbjct: 170 WQQSIKSIEEELVEKYQQSWK 190
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 24.2 bits (50), Expect = 9.3
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +3
Query: 168 RKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNH 347
RK +++ + +K TL++ G T +K K L +S + S + N
Sbjct: 191 RKVDASALEKKSCLLPNSSGTLTDQRGLDT---IKHKSIEQNEILHVISDTLSSPRRRNP 247
Query: 348 STSTPSCPVRLTFTKTALRD 407
S+P P+R +F+K+ +R+
Sbjct: 248 LLSSPKTPLRRSFSKSKVRN 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,129
Number of Sequences: 5004
Number of extensions: 39957
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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