Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H24
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   2.3  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   3.9  
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880...    27   5.2  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    27   5.2  
09_04_0502 - 18163192-18163435,18164000-18164154,18164243-181644...    27   5.2  
07_03_1700 - 28810239-28810870,28811304-28812594                       27   6.9  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    27   6.9  
03_01_0600 - 4419917-4419967,4420081-4420287,4420386-4420560,442...    27   9.1  

>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 183 NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 314
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 128 TVLLRSSLRCVDCSCPAFERMG 63
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,
            8802144-8802210,8802611-8802714,8802798-8802900,
            8803103-8803401,8804009-8804263,8805471-8805776,
            8805866-8806194,8806829-8806916,8807027-8807164,
            8807438-8807458
          Length = 938

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 285  RIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKTALRDPAF 416
            ++  D++ ++   CS++  N     P+   R +F  T+   P+F
Sbjct: 870  QVYGDIVNITRIFCSIKRCNIQKYPPTSTTRPSFPPTSTTSPSF 913


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 86  NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 172
           NYN+  V   KN+ A+R  DIF KT  +  +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552


>09_04_0502 -
           18163192-18163435,18164000-18164154,18164243-18164447,
           18164530-18164819,18164845-18164853,18164920-18165085,
           18165170-18165258,18165365-18165432,18165843-18166164
          Length = 515

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 332 AAPKPFDKHTFMPSALDFYQNRTSRPCILSGYITGL 439
           A P    K T +PS L F+QN +S+   L  YI  L
Sbjct: 379 AYPNVVRKETLLPSDLRFFQNHSSQMAALD-YIVSL 413


>07_03_1700 - 28810239-28810870,28811304-28812594
          Length = 640

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 82  GQLQSTQRKELRSNTVLGHF*KDFRTVPTERQI 180
           G+L S Q   LRSN + G    D  T+P+ R I
Sbjct: 94  GKLDSLQVLSLRSNRLAGSLPSDVTTLPSLRSI 126


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 258 PICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLT 383
           PICM       +         MC V HL+H +  P C   LT
Sbjct: 61  PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLT 102


>03_01_0600 -
           4419917-4419967,4420081-4420287,4420386-4420560,
           4420677-4420708,4421179-4421280,4421406-4421552
          Length = 237

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 153 SYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRII 293
           +Y   R+       RK+ +   R L+ +  +  +TP  MK+K +RII
Sbjct: 11  AYEAARERTVEENKRKMEALNLRHLSAAIAVAPKTPSPMKQKRRRII 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,523
Number of Sequences: 37544
Number of extensions: 235600
Number of successful extensions: 636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)