Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H24
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.76 
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   1.8  
SB_54892| Best HMM Match : DHH (HMM E-Value=0.057)                     28   4.0  
SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)                        28   4.0  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              27   5.3  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 27   7.1  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    27   7.1  
SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)          27   9.3  
SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)                     27   9.3  
SB_15169| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    27   9.3  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 29   TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 199
            T Y P  T S Y      Q+P+N++LH     +A+        T    L  GKF+S G+ 
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770

Query: 200  IDFHD 214
             D H+
Sbjct: 4771 RDVHE 4775


>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 221 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 90
           P H  NQ  C    IC+  G   KS  KCP    L  S  RC  C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +2

Query: 164  LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 295
            L+KGKF+     S  K ID   E+   F+G+ W ++ DL  +++E  K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143


>SB_54892| Best HMM Match : DHH (HMM E-Value=0.057)
          Length = 384

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 350 DKHTFMPSALDFYQNRTSRPCILSGYITG 436
           DK   +P A + + N T R  ILSG ITG
Sbjct: 250 DKQDKVPQAPEQFANSTIRSWILSGLITG 278


>SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)
          Length = 573

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 330 VQHLNHSTSTPSCPVRLTFTKTALRD 407
           +QH  HS +T  C  RL   K AL D
Sbjct: 393 IQHFAHSAATSGCYERLLRAKAALED 418


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 179 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 319
           FE Y    ++ DEKA  ++  Y ++ A  +  E     +RSY  + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 144  KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAM 323
            K + YS   K  ++  AR   S ++  +   + + KR     KKK++R  N  MKL+  +
Sbjct: 893  KFVDYSEKAKLRASAQARNSRSPVEVAIEEEKRVAKRKKEQRKKKVRRRKNAAMKLANKL 952

Query: 324  CS 329
             S
Sbjct: 953  VS 954


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 161 SLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 298
           +LQ+G   S   K+++    A+   G+  Q++ ++ E E  +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544


>SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)
          Length = 361

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 367 HEGVLVEWFRCCTEHMASDNFIRSLIILC 281
           H+GV++      T H  +DNFI    I+C
Sbjct: 93  HQGVVISRDDISTSHEEADNFIVQQAIMC 121


>SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)
          Length = 372

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 88  LQSTQRKELRSNTVLGHF*KDFRTVPTERQIRIVWQE 198
           L    +     NT   HF + + TV  +R I I W E
Sbjct: 84  LDENSKSSTMKNTWTSHFKRGYLTVHPDRTISIEWDE 120


>SB_15169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/75 (22%), Positives = 37/75 (49%)
 Frame = +3

Query: 141 LKRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLA 320
           + + S S     + N      ++  K  +T +E+  K+TP   K++ +R+++DL++    
Sbjct: 1   MDKTSASSNTTGDENENGSFCVAKGKCTVTYAES-AKKTP---KRRERRLVSDLIRADRK 56

Query: 321 MCSVQHLNHSTSTPS 365
             + +H N    TP+
Sbjct: 57  QANGKHKNGQKRTPT 71


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 35   YYPLMTSYYFPFAQRPDNYN 94
            Y PL T+ ++ +  RP NYN
Sbjct: 1560 YSPLSTAPFYDYGYRPQNYN 1579


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 82   RPLSEWEIV*SHQGIVTSLN 23
            RPL +W IV ++QG + S+N
Sbjct: 3254 RPLEDWPIVPTNQGTLVSVN 3273


>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 86  NYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAI--NFVGNYWQENA 259
           +Y    V++YE   +   +++++ +S ++    SY +  +   E++   ++  +Y +   
Sbjct: 192 SYKRSYVRSYER-SYKRSYKRSYKRSYKRSYKRSYKRSYERSYERSYKRSYKRSYERSYE 250

Query: 260 DLYEEEVTKDYQRSYE 307
             YE    + Y+RSYE
Sbjct: 251 RSYERSYERSYERSYE 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,420,529
Number of Sequences: 59808
Number of extensions: 296560
Number of successful extensions: 867
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)