Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H24
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   0.62 
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.1  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   2.5  
At5g56560.1 68418.m07058 F-box family protein contains F-box dom...    27   4.4  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    27   5.8  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   5.8  
At1g09280.2 68414.m01038 expressed protein contains Pfam profile...    27   5.8  
At1g09280.1 68414.m01037 expressed protein contains Pfam profile...    27   5.8  
At5g49860.1 68418.m06174 jacalin lectin family protein similar t...    27   7.6  
At5g15890.1 68418.m01859 expressed protein                             27   7.6  
At4g10670.1 68417.m01743 transcription elongation factor-related...    27   7.6  
At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR) domai...    27   7.6  

>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 192 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 335
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 116 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 235
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 194 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 292
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 607

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 319 PCARCST*TIRQAHLHAQCA*LLPK----PHFETLHSIRLYY 432
           PC  CS  T+++  LH  C  ++P     P  +TLH + + +
Sbjct: 122 PCCLCSCITLKELTLHDLCIKVVPAWFRLPSLKTLHLLSVKF 163


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 2/136 (1%)
 Frame = +2

Query: 11  WYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESY 190
           WY+P+  GY   + ++++P    P    L +      + + D      V+ +  G  E  
Sbjct: 421 WYAPLGAGYITALGAHFYPMPLPPAAEKLEAQGGAGGVPWDDGSNFERVRKIYIGTCEVG 480

Query: 191 GKKIDFHDEKAIN--FVGNYWQENADLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTF 364
              + F  E  I    VG++      L  EE   D    Y           P   D    
Sbjct: 481 IVSVRFLYENDIEEIVVGDHHGNKNLLRHEEFDLDNACEYLTSVEGSYDVIPGSEDVEVI 540

Query: 365 MPSALDFYQNRTSRPC 412
           +   L F  N+ + PC
Sbjct: 541 L--MLKFTTNKRTSPC 554


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 126 GSWTFLKRLSYSPY 167
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


>At1g09280.2 68414.m01038 expressed protein contains Pfam profile:
           PF03959 domain of unknown function (DUF341)
          Length = 575

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +3

Query: 261 ICMKKKLQRIINDLMKLS-----LAMCSVQHLNHSTSTPSCPVRLTFTKTALRDPAFYQA 425
           +C KK    + +D  K S     +A C    L + T T      LT+ KTA  +   +  
Sbjct: 402 VCNKKFAWLVSSDFDKPSETGWTVAQCQFDPLQYQTQTEGFDKSLTYLKTAFEEKGPFDG 461

Query: 426 IL 431
           IL
Sbjct: 462 IL 463


>At1g09280.1 68414.m01037 expressed protein contains Pfam profile:
           PF03959 domain of unknown function (DUF341)
          Length = 581

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +3

Query: 261 ICMKKKLQRIINDLMKLS-----LAMCSVQHLNHSTSTPSCPVRLTFTKTALRDPAFYQA 425
           +C KK    + +D  K S     +A C    L + T T      LT+ KTA  +   +  
Sbjct: 408 VCNKKFAWLVSSDFDKPSETGWTVAQCQFDPLQYQTQTEGFDKSLTYLKTAFEEKGPFDG 467

Query: 426 IL 431
           IL
Sbjct: 468 IL 469


>At5g49860.1 68418.m06174 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 221

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 2/138 (1%)
 Frame = +2

Query: 5   FSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFE 184
           + WY    +GY   + +YY+P    P +  L +        + D      V+ +  G  E
Sbjct: 45  YGWYKT-GSGYTTALGAYYYPMPLPPSSEKLEAQGGAGGAPWDDGSNFEGVRKIYIGTGE 103

Query: 185 SYGKKIDFHDEKAIN--FVGNYWQENADLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKH 358
                I F  E  I+   VG++      L  EE   DY   Y           P   +  
Sbjct: 104 IGIVSIKFLYENDIHEIIVGDHHGNKNLLRHEEFDLDYPSEYLTSVEGSYDVVPGSEEDE 163

Query: 359 TFMPSALDFYQNRTSRPC 412
             +   L F  N  + PC
Sbjct: 164 VMI--MLKFTTNMRTSPC 179


>At5g15890.1 68418.m01859 expressed protein
          Length = 526

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 291 INDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKTALRD 407
           +N  +   L   S++HLN S+   S PV  + ++T +RD
Sbjct: 144 VNGPIPAPLNHTSLRHLNSSSDDHSSPVTTSPSRTRIRD 182


>At4g10670.1 68417.m01743 transcription elongation factor-related
           low similarity to chromatin-specific transcription
           elongation factor FACT 140 kDa subunit [Homo sapiens]
           GI:5499741
          Length = 470

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/61 (22%), Positives = 33/61 (54%)
 Frame = +3

Query: 138 FLKRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL 317
           +LK +S+      +S+ + +++ S  ++ +       +RT +  ++KLQ + N+   LSL
Sbjct: 61  YLKEVSFRTKDSRHSSDVVQQVKSLRRKVMARESERAERTSLVNQEKLQIVRNNSKPLSL 120

Query: 318 A 320
           +
Sbjct: 121 S 121


>At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 239

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 165 YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIIND-LMKLSL 317
           ++K   NR   ++    +  + ++ T+G  + IC     + I ND L+KL+L
Sbjct: 155 FKKTCQNRTEDEINLRRRALIDVANTLGYHSTICKANMTKEITNDVLVKLNL 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,317
Number of Sequences: 28952
Number of extensions: 199369
Number of successful extensions: 596
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)