Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H23
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 239 1e-63
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 32 0.27
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 31 0.48
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.48
SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 29 1.9
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 1.9
SB_12735| Best HMM Match : PT (HMM E-Value=0.36) 29 1.9
SB_8303| Best HMM Match : START (HMM E-Value=0.0093) 29 1.9
SB_34252| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 2.6
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 2.6
SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21) 29 3.4
SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21) 29 3.4
SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06) 28 4.5
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 28 4.5
SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 28 4.5
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 28 4.5
SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035) 28 4.5
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 28 4.5
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_7406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_4623| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 28 4.5
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_34709| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 28 4.5
SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13) 28 4.5
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 28 5.9
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091) 28 5.9
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 28 5.9
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 27 7.8
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33) 27 7.8
SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23) 27 7.8
SB_23644| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 27 7.8
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 27 7.8
SB_59676| Best HMM Match : VWA (HMM E-Value=8.8e-12) 27 7.8
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 27 7.8
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86) 27 7.8
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 239 bits (584), Expect = 1e-63
Identities = 121/149 (81%), Positives = 133/149 (89%)
Frame = +2
Query: 104 ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGII 283
+ P Y FFGVMGA +A++FS+LGAAYGTAKSGTGIAAM+VMRPE IMKSIIPVVMAGII
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64
Query: 284 AIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 463
AIYGLVVAVLI S+ S +YTLYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTA
Sbjct: 65 AIYGLVVAVLIGSSI---SKDYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTA 121
Query: 464 QQPRLFVGMILILIFAEVXGLYGLIVAIL 550
QQPRLFVGMILILIFAEV GLYGLIVA++
Sbjct: 122 QQPRLFVGMILILIFAEVLGLYGLIVALI 150
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -2
Query: 525 RPXTSAKMRIRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTARPAPK*MNPL 358
+P T+ K R PT +L + +PT AKP +PT RP K PL
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPL 190
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 444 ASPTMPMAKPAARPEKPTARPAPK*MNPL 358
A+P AKP R PT RP K PL
Sbjct: 281 ATPRPTKAKPTTRKRMPTERPTKKPTKPL 309
>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +1
Query: 142 GGVCHHLQLPWCCIWHSQVRHRYCRHGGDAA*ADHEIHH----SRCHGGYHCHLRTGRSC 309
GGVC + + C+ + + C D + HH S HGGY C +G +
Sbjct: 1204 GGVCKNEHGGYSCVCKAGFTGKNCEQDVDECAGVNPCHHGGVCSNSHGGYSCKCASGYTG 1263
Query: 310 PDC 318
+C
Sbjct: 1264 KNC 1266
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 498 IRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
++I+P N + PR P + T P P P PT P P
Sbjct: 205 VKILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVP 245
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 377 GAGLAVGFSGLAAGFAIGIVG 439
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 316 NQDSYDQSVDGNDTRHDNGND 254
N DS D +GND+ DNGND
Sbjct: 5 NDDSVDSDTNGNDSVSDNGND 25
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = -2
Query: 459 VPRTPAS-PTMPMAKPAARPEKPTARPAP 376
+P TP P P P RP PT RP P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGP 1382
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 450 TPASPTMPMAKPAARPEKPTARPAPK*MNPL 358
TPA PT+PMA A + P+ PA PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 486 PTNNLGCWAVPRTPASP--TMPMAKPAARPEKPTARPAP 376
P+NN G A P TPA+P M +A P+ T P P
Sbjct: 87 PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125
>SB_12735| Best HMM Match : PT (HMM E-Value=0.36)
Length = 1148
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 316 NQDSYDQSVDGNDTRHDNGNDGFHDLLRPHHRHG 215
N+D+ DQS D +D + D H+L + HG
Sbjct: 537 NKDAVDQSKDKDDVTQPDDTDDVHELPKDEEDHG 570
>SB_8303| Best HMM Match : START (HMM E-Value=0.0093)
Length = 522
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 69 TCKYSHIQEKWPKIQSMDLSLELWGRRLPSSSAPLVLHMAQPSQAPVL 212
T + H + K +I+ D SL L RR+PSSS+ M+ P + P +
Sbjct: 467 TLRKYHCEHKDDEIEEEDSSLSLEKRRMPSSSS----EMSSPDRKPYM 510
>SB_34252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 316 NQDSYDQSVDGNDTRHDNGNDGFHD 242
N D D D ND HDN +D H+
Sbjct: 3 NDDDDDNDNDNNDDNHDNNDDNDHN 27
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = -2
Query: 540 TMSPYRPXT-SAKMRIRIIPTNNLGCWAVPRT-PASPTMPMAKPAARPEKPTARPAP 376
T +P P T +A + PT P PA+P P A PAAR AR P
Sbjct: 49 TAAPAAPVTPTAAPAAPVTPTAAPAARVTPTAAPAAPVTPTAAPAARVTPTAARVTP 105
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = -2
Query: 540 TMSPYRPXT-SAKMRIRIIPTNNLGCWAVPRT-PASPTMPMAKPAARPEKPTARPAP 376
T +P P T +A + PT P PA+P P A PAAR AR P
Sbjct: 206 TAAPAAPVTPTAAPAAPVTPTAAPAARVTPTAAPAAPVTPTAAPAARVTPTAARVTP 262
>SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
Length = 314
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 266 VMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGD 442
++AG + + +++A+ SL PSN L LGA G +GL F + I D
Sbjct: 43 MVAGTLLNFIVILAIATTPSLKTPSNILILGLALADLGASFCPGVTGLV--FKVSIYKD 99
>SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
Length = 325
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 266 VMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGD 442
++AG + + +++A+ SL PSN L LGA G +GL F + I D
Sbjct: 54 MVAGTLLNFIVILAIATTPSLKTPSNILILGLALADLGASFCPGVTGLV--FKVSIYKD 110
>SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06)
Length = 817
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 312 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 344
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 447 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 479
>SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 795
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 349 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 381
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 637 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 669
>SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)
Length = 242
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Frame = +1
Query: 247 EIHHSRCHGGYH-----CHLRTGRSCP 312
E+H SRCH +H C LR GRS P
Sbjct: 33 EVHRSRCHSAHHHADWTCSLR-GRSVP 58
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 132 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 164
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 354 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 386
>SB_7406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 132 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 164
>SB_4623| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 452
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 62 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 94
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 442 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 474
>SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 516 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 548
>SB_34709| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 436
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 114 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 146
>SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13)
Length = 776
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 477 NLGCWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
N GC A P TP+ PT + P++P+ P P
Sbjct: 334 NGGCTA-PNTPSDPTCHCPQRTVPPQRPSELPFP 366
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 468 CWAVPRTPASPTMPMAKPAARPEKPTARPAP 376
C V TP PT +P RP KPT +PAP
Sbjct: 1421 CREVRPTPTKPTKRPTRP-TRPPKPT-KPAP 1449
>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
Length = 497
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -1
Query: 325 GTC--NQDSYDQSVDGNDTRHDNGND 254
G C N D+ D DGND DN ND
Sbjct: 124 GPCCDNDDNNDGDDDGNDDNDDNNND 149
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = -1
Query: 310 DSYDQSVDGNDTRHDNGNDGFHDLLRPHHRHGGNTGA*LGC--AICSTKGAEDDGRRRP 140
DS + DGN R +G HHR TG C TK A D +R+P
Sbjct: 2894 DSVQSNRDGNHDRGTHGERSTDPTSLRHHRKQEQTGMYAKCQKGELPTKLARDTDKRKP 2952
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = -2
Query: 483 TNNLGCWAVPRTPASPTMPMAKPAARPEKPTARPAPK*MNPLYRV*LLLGWSRE---PAI 313
T N WA P P+S + P + P+A TA P + + WS P+
Sbjct: 1351 TPNSQPWAAPGGPSSSSTPSSDPSAEAASSTANAVTSAEQPKPQDEGISSWSTNQPIPSA 1410
Query: 312 RTATTSP*MAMIPAMTTG 259
P +A P M +G
Sbjct: 1411 EEKQQQPPVAPGPRMGSG 1428
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 450 TPASPTMPMAKPAARPEKPTARPAPK*MNPL 358
TPA PT+P A A + P+ PA PL
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
Length = 665
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 531 PYRPXTSAKMRIRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPT-ARPAPK 373
P +P A+ +++P L A P + PT+ KP+ P+KP +P+ K
Sbjct: 321 PSKPTAGARDMKKVLP-KELKKPAPPPENSKPTIDAPKPSIPPKKPVPPKPSTK 373
>SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23)
Length = 396
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 349 VVIAGLV*GTCNQDSYDQSVDGNDTRHDNGNDGFHD 242
+++ G++ G +DS DGN DN NDG H+
Sbjct: 143 MMVVGIIMG---EDSGQGDYDGNGDDDDNDNDGGHE 175
>SB_23644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 325 GTCNQD-SYDQSVDGNDTRHDNGNDGFHD 242
G CN+D D S DGND D GND D
Sbjct: 68 GNCNRDDDNDNSGDGNDNSGD-GNDNSGD 95
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 450 TPASPTMPMAKPAARPEKPTARPAPK*MNPL 358
TPA PT+P A A + P+ PA PL
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 729
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 453 RTPASPTMPMAKPAARPEKPTARP 382
+ P +P M M KP A KP A+P
Sbjct: 352 KKPENPLMAMKKPVAPAAKPEAKP 375
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 450 TPASPTMPMAKPAARPEKPTARPAPK*MNPL 358
TPA PT+P A A + P+ PA PL
Sbjct: 966 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_59676| Best HMM Match : VWA (HMM E-Value=8.8e-12)
Length = 678
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 355 QGVVIAG-LV*GTCNQDSY-DQSVDGNDTRHDNGND 254
QGV + G LV G + DS D DGND DN ND
Sbjct: 485 QGVTMMGMLVNGDDDDDSKNDGGGDGNDYEVDNSND 520
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +1
Query: 151 CHH-LQLPWCCIWHSQVRHRYCRHGGDAA*A-DHEIH-HSRCHGGYHCHLRTGRSCPD 315
C+H + + C + S R +C G + + D H H HC+ R G SC D
Sbjct: 104 CYHKMDVKPCHNYSSSERAIHCYKGEETVSSQDIPSHNHPSSESAIHCYKRRGNSCQD 161
>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
Length = 427
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 349 VVIAGLV*GTCNQDSYDQSVDGNDTRHDNGNDGFHD 242
V++ G+ G C++DS D +D D+ +DG D
Sbjct: 349 VLLNGIDAGVCDKDSDDDGIDDGVCDKDSDDDGVCD 384
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,554,362
Number of Sequences: 59808
Number of extensions: 514812
Number of successful extensions: 2026
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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