Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H22
(261 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 142 3e-35
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 136 3e-33
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 120 1e-28
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.13
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.17
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 26 3.6
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342... 26 3.6
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 26 4.8
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598... 26 4.8
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 25 6.3
05_03_0363 - 12983243-12983304,12983526-12983658 25 6.3
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 25 6.3
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557... 25 8.4
06_01_1064 - 8609162-8610583 25 8.4
06_01_1060 + 8522131-8523606 25 8.4
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 25 8.4
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 142 bits (345), Expect = 3e-35
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR KNKPYPKSR+CRGVP+PKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGKD 261
SSEALEA RI CNKY+ KN GKD
Sbjct: 61 SSEALEAARIACNKYMTKNAGKD 83
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 136 bits (328), Expect = 3e-33
Identities = 58/79 (73%), Positives = 67/79 (84%)
Frame = +1
Query: 25 PARCYRYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 204
P RCYR KNKPYPKSR+CRGVP+PKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 205 LEAGRICCNKYLVKNCGKD 261
LEA RI CNKY+ K+ GKD
Sbjct: 372 LEAARIACNKYMAKHAGKD 390
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 120 bits (290), Expect = 1e-28
Identities = 52/76 (68%), Positives = 62/76 (81%)
Frame = +1
Query: 34 CYRYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 213
CYR KNKPYPKSR+CRGVP+PKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 214 GRICCNKYLVKNCGKD 261
RI CNKY+ K+ GKD
Sbjct: 64 ARIACNKYMTKSAGKD 79
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.13
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 136 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 255
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 241 RGTCCNRYGLLPAPQNSAARTHQTLSARIVGSHPLS 134
R CC GL P P S+ R+ +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 43 YCKNKPYPKSRFCRGVPEPKIRIFDL--GKKRATVDDFPLCVHLVSDEYEQLSSE 201
+CK+ P KS + G+P P FD+ GK R ++ L +V+D + + E
Sbjct: 141 HCKDHPRAKSLY--GIPFPYFDTFDVIYGKDRTGREEEELSDEVVADMENENTDE 193
>01_05_0511 -
22831889-22832523,22833743-22833835,22834018-22834215,
22834365-22834494,22834596-22834714,22835244-22835487,
22835607-22835807
Length = 539
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 250 SSLRGTCCNRYGLLPAPQNSAARTHQTLS 164
SS+ G C+ YG+ P+P+ + R LS
Sbjct: 281 SSVEGRDCSYYGVCPSPRGVSRRITDELS 309
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 253 RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLV 95
R +L C N Y L AP N + LS++ V + P R+Y LV
Sbjct: 96 RENLPAVCLNGYSTLLAPANEVLIPQELLSSKTV--------WTPDRQYEDLV 140
>10_08_0972 +
21958658-21958825,21959006-21959197,21959645-21959845,
21959920-21960009,21960424-21960591,21961100-21961354,
21961506-21961789,21961878-21962040,21962156-21962502,
21962726-21962759
Length = 633
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 28 ARCYRYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVH 165
A +RYC + + +S+F R P + DL K V + C H
Sbjct: 407 AEIFRYCLDGTHERSKFLRAA-APSVNEDDLIKLANQVSLYSGCTH 451
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 106 RIFDLGKKRATVDDFPL 156
R+ DLGK+RA + D PL
Sbjct: 76 RLEDLGKRRARLQDIPL 92
>05_03_0363 - 12983243-12983304,12983526-12983658
Length = 64
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 202 PQNSAARTHQTLSARIVGSHPLSLSFCP 119
P A TH L A V S PL +FCP
Sbjct: 21 PALHPASTHPALIAVSVASLPLPQNFCP 48
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 19 RRPARCYRYCKNKPYPKSRFCRGVPEPKIR 108
R P++ +RY + P P++R R P P I+
Sbjct: 1026 RAPSQDWRYTPDVPRPRTRGRRRGPSPAIQ 1055
>06_03_0175 +
17553447-17553667,17555313-17555467,17555625-17555713,
17556253-17556376,17556920-17556989,17557345-17557441,
17559365-17559427,17559504-17559581,17559675-17559737
Length = 319
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 55 YSYNIDNISLVGAPLCSP 2
Y Y D I L+G PLC P
Sbjct: 168 YLYPYDEIVLLGIPLCVP 185
>06_01_1064 - 8609162-8610583
Length = 473
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 87 TPTKPRFRIRFILTISITSRWSAPHCV 7
+P K RFR++ ++ + SA HCV
Sbjct: 266 SPAKARFRLKHVVRTLTGAEDSAHHCV 292
>06_01_1060 + 8522131-8523606
Length = 491
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 87 TPTKPRFRIRFILTISITSRWSAPHCV 7
+P K RFR++ ++ + SA HCV
Sbjct: 284 SPAKARFRLQHVVRTLTAAEDSAYHCV 310
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 150 EVIHCRSLFAQVENTDLWFRHTPTKP 73
+V+HC S + + LW R P P
Sbjct: 473 DVVHCPSCSSYLHPPRLWLRAAPESP 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,472,769
Number of Sequences: 37544
Number of extensions: 141578
Number of successful extensions: 376
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -