Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H22
(261 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 141 5e-35
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 141 5e-35
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 141 7e-35
At1g53180.1 68414.m06027 expressed protein 30 0.24
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 0.74
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 1.7
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 27 1.7
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 27 1.7
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 27 1.7
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 27 1.7
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 1.7
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 26 3.0
At3g15115.1 68416.m01912 expressed protein 26 3.9
At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase fa... 26 3.9
At5g12390.1 68418.m01457 expressed protein 25 5.2
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 25 5.2
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 25 5.2
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 25 5.2
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 25 5.2
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 25 5.2
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00... 25 6.9
At1g04000.1 68414.m00386 expressed protein Location of ESTs 203I... 25 6.9
At5g49040.1 68418.m06068 disease resistance-responsive protein-r... 25 9.1
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 25 9.1
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 25 9.1
At3g19680.1 68416.m02493 expressed protein 25 9.1
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 141 bits (342), Expect = 5e-35
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR K KPYPKSR+CRGVP+PKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGKD 261
SSEALEA RI CNKY+VK+ GKD
Sbjct: 61 SSEALEAARIACNKYMVKSAGKD 83
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 141 bits (342), Expect = 5e-35
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR K KPYPKSR+CRGVP+PKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGKD 261
SSEALEA RI CNKY+VK+ GKD
Sbjct: 61 SSEALEAARIACNKYMVKSAGKD 83
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 141 bits (341), Expect = 7e-35
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR K KPYPKSR+CRGVP+PKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGKD 261
SSEALEA RI CNKY+VK+ GKD
Sbjct: 61 SSEALEAARIACNKYMVKSAGKD 83
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 29.9 bits (64), Expect = 0.24
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 4 ENTMGRRPARCYRYCKNKPYPKSRFCRGVPEPKIRIFDLGK 126
EN RR +R RYC + PYP S PE K+ D+GK
Sbjct: 22 ENLFTRR-SRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 172 SDEYEQLSSEALEAGRICCNKYLV 243
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 124 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 255
KK + PL + +++ EYE GR CCN ++CG
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCG 292
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 250 SSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 143
SS+R +CC L+PA N A + A+I H
Sbjct: 62 SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 250 SSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 143
SS+R +CC L+PA N A + A+I H
Sbjct: 67 SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 250 SSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 143
SS+R +CC L+PA N A + A+I H
Sbjct: 62 SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 43 YCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDE 180
+CK++ R+C PE R GK + LCVH V++E
Sbjct: 248 HCKSQCINHGRYCAPDPEDNFREGYEGKDVVLENLRQLCVHRVANE 293
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 88 VPEPKIRIFDLGKKRATVDDFPL 156
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +1
Query: 127 KRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 234
K A DF + V V Y LSSEALE CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330
>At3g15115.1 68416.m01912 expressed protein
Length = 339
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 4 ENTMGRRPARCYRYCKNKPYP-KSRFCRGVPEPKI 105
+N + RR +R RYC + PYP S P+P++
Sbjct: 28 DNLLDRR-SRILRYCHSDPYPFTSSSSSTCPKPEL 61
>At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to GS-AOP loci [GI:16118889,
GI:16118887, GI:16118891, GI:16118893]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 320
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 141 HCRSLFAQVENTDLWFRHTPTKPRF 67
H L + E D+W+ TP+ RF
Sbjct: 204 HITGLMLKSEKEDVWYHFTPSPTRF 228
>At5g12390.1 68418.m01457 expressed protein
Length = 167
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 112 FDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 219
F G A+ D+FPLC + E+ +EA + GR
Sbjct: 15 FFSGAASASADEFPLCDSDIISGCEKELAEAQDEGR 50
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -3
Query: 211 LPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLVQAHPDKTE 71
+P P++S + ++ SA++ +HP+ P+ Q H T+
Sbjct: 391 VPKPKHSGSGNRKSSSAKVAKNHPVEEPKSPAPSNSKSEQQHLKSTK 437
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 40 RYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDE 180
R CK++ K R+C PE GK + LCV+ V++E
Sbjct: 249 RQCKSQCINKGRYCAPDPEQDFSSGYDGKDVVVENLRQLCVYKVANE 295
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 40 RYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDE 180
R CK++ K R+C PE GK + LCV+ V++E
Sbjct: 249 RQCKSQCINKGRYCAPDPEQDFSSGYDGKDVVVENLRQLCVYKVANE 295
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 40 RYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDE 180
R CK++ K R+C PE GK + LCV+ V++E
Sbjct: 249 RQCKSQCINKGRYCAPDPEQDFSSGYDGKDVVVENLRQLCVYKVANE 295
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 40 RYCKNKPYPKSRFCRGVPEPKIRIFDLGKKRATVDDFPLCVHLVSDE 180
R CK++ K R+C PE GK + LCV+ V++E
Sbjct: 249 RQCKSQCINKGRYCAPDPEQDFSSGYDGKDVVVENLRQLCVYKVANE 295
>At4g33290.1 68417.m04736 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 430
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 151 PLCVHLVSDEYEQLSSEALEAGRI 222
PL V+++ +EYE ++S + G+I
Sbjct: 244 PLPVNVIDNEYEYVTSSCVREGKI 267
>At1g04000.1 68414.m00386 expressed protein Location of ESTs
203I24T7, gb|H76794 and 203I24XP, gb|AA605510
Length = 152
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 214 LLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKY 107
L+P P N ++ T +A +GS+ L L+ S +Y
Sbjct: 46 LVPPPVNPISKKSSTAAAEPIGSNQLMLAGYLSHEY 81
>At5g49040.1 68418.m06068 disease resistance-responsive
protein-related / dirigent protein-related similar to
dirigent protein [Thuja plicata] gi|6694699|gb|AAF25360;
similar to pathogenesis-related protein [Pisum sativum]
gi|4585273|gb|AAD25355
Length = 191
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 73 RFCRGVPEPKIRIFDLGKKRATVDDFPLCVH 165
RF RG E + ++FD+ ATV+ +H
Sbjct: 160 RFARGYVEARTKLFDMKTGDATVESNCYILH 190
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 136 SLSFCPSRKYGSLVQAH 86
SLSFCPS Y S + H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 261 IFTAVLYEVLVATDTACFQRLRTQLLVLIRH*VH 160
I T + VLV T ACF+ LR L+ VH
Sbjct: 322 IDTLLEERVLVGTGRACFESLRPLAYSLLAEIVH 355
>At3g19680.1 68416.m02493 expressed protein
Length = 491
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 173 DTKCTHSGKSSTVALFLPKSKIRIFGS 93
+T+C+ SG STVA SK +I S
Sbjct: 70 ETRCSSSGNVSTVAACFSLSKAQIEAS 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,864,114
Number of Sequences: 28952
Number of extensions: 109850
Number of successful extensions: 306
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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