Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H19
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0284 + 16384553-16384755,16384884-16385199,16385889-163859...    33   0.25 
04_04_1538 + 34239913-34241274,34241468-34241578                       31   0.59 
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084...    29   2.4  
09_04_0193 - 15492102-15492746,15492833-15492946,15493042-154933...    28   5.5  
11_02_0100 - 8298182-8298448,8298607-8298747,8299002-8299237,829...    27   9.6  
08_02_1557 + 27867977-27869134                                         27   9.6  
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    27   9.6  
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329           27   9.6  
03_05_1159 + 30822397-30822862,30823228-30823814                       27   9.6  

>09_04_0284 +
           16384553-16384755,16384884-16385199,16385889-16385971,
           16386802-16386849,16387701-16387965,16388058-16388189,
           16388313-16388448,16388557-16388594
          Length = 406

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 3   DLGYIKMARNRNNHCGIASAASYPLV 80
           D GY KM   +N  CGIA+ ASYP+V
Sbjct: 381 DNGYFKMEMGKNM-CGIATCASYPIV 405


>04_04_1538 + 34239913-34241274,34241468-34241578
          Length = 490

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 9   GYIKMARN---RNNHCGIASAASYPL 77
           GYI+M RN   R   CGIA  ASYP+
Sbjct: 349 GYIRMERNVTARTGKCGIAMMASYPI 374


>04_04_1536 -
           34207425-34207490,34207801-34208268,34208345-34208485,
           34208582-34208820,34209950-34210436
          Length = 466

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +3

Query: 9   GYIKMARNRN---NHCGIASAASYP 74
           GY++M RN N     CGIA  ASYP
Sbjct: 332 GYVRMERNINVTTGKCGIAMMASYP 356


>09_04_0193 -
           15492102-15492746,15492833-15492946,15493042-15493332,
           15493412-15493720,15493815-15494552
          Length = 698

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 306 AVILLTFIYLRDVII-FFSLLLFCNYFFLILFRIPDVKYNVYV 181
           A ++L F  LR +I+ F+S  LFC    L +F +P+ +  V+V
Sbjct: 491 ANLILLFFLLRKLILPFYSFTLFCVILPLTMF-VPEAELPVWV 532


>11_02_0100 -
           8298182-8298448,8298607-8298747,8299002-8299237,
           8299251-8299362
          Length = 251

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 9   GYIKMAR----NRNNHCGIASAASYPL 77
           GYI+M R    + N  CGIA  ASYP+
Sbjct: 207 GYIRMQRGVSSDSNGLCGIAMEASYPV 233


>08_02_1557 + 27867977-27869134
          Length = 385

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 9   GYIKMARN---RNNHCGIASAASYPL 77
           GYI+M R+   +   CGIA  ASYP+
Sbjct: 328 GYIRMKRDVSAKEGLCGIAMEASYPI 353


>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +3

Query: 9   GYIKMARN---RNNHCGIASAASYPL 77
           GY++M RN    +  CGIA   SYPL
Sbjct: 331 GYVRMERNIKASSGKCGIAVEPSYPL 356


>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
          Length = 264

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -2

Query: 363 ITSSIRYDSLFKI*QLTLGAVILLTFIYLRDV---IIFFSLLLFC 238
           +T S    ++FKI +L LG V L   +YL+ +   II  SLL+ C
Sbjct: 88  VTLSHNEGNIFKIIKLKLGIVKLEFIVYLKIICMPIILCSLLVTC 132


>03_05_1159 + 30822397-30822862,30823228-30823814
          Length = 350

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 9   GYIKMARN--RNNHCGIASAASYPL 77
           GY+++ R   R   CGIA  ASYP+
Sbjct: 326 GYVRIRRGVGREGACGIAQMASYPV 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,072,427
Number of Sequences: 37544
Number of extensions: 139451
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)