Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H19
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                45   6e-05
SB_46438| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   7e-04
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_34453| Best HMM Match : DUF1610 (HMM E-Value=5.5)                   28   7.4  
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 1220

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = +3

Query: 9   GYIKMARNRNNHCGIASAASYPL 77
           GYI M+RN+NN CGIAS+ASYPL
Sbjct: 234 GYIMMSRNKNNQCGIASSASYPL 256


>SB_46438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/24 (75%), Positives = 22/24 (91%)
 Frame = +3

Query: 9   GYIKMARNRNNHCGIASAASYPLV 80
           GYI M+RN++N CGIAS+ASYPLV
Sbjct: 40  GYILMSRNKDNQCGIASSASYPLV 63


>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +3

Query: 9   GYIKMARNRNNHCGIASAASYPLV 80
           GYIK+ARN ++ CG+AS ASYPLV
Sbjct: 308 GYIKIARNDHDKCGVASKASYPLV 331


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 9   GYIKMARNRNNHCGIASAASYPLV 80
           GY+ M++  NN CG+A+AA+Y L+
Sbjct: 836 GYVLMSQKDNN-CGVATAATYVLM 858


>SB_34453| Best HMM Match : DUF1610 (HMM E-Value=5.5)
          Length = 173

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -2

Query: 249 LLFCNYFF---LILFRIPDVKYNV 187
           LLFC  FF   LIL R PD K++V
Sbjct: 89  LLFCRIFFADFLILIRSPDTKWSV 112


>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 351 IRYDSLFKI*QLTLGAVILLTFIYLRDVIIFFSLLLFC-NYF 229
           + Y+++F + +   GAVI+ TFI L     F +L + C NYF
Sbjct: 34  LHYETIFTLQERRHGAVIIHTFICL---YCFVALAILCDNYF 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,742,310
Number of Sequences: 59808
Number of extensions: 189680
Number of successful extensions: 266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)