Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H19
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical pr...    49   2e-06
AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine re...    31   0.53 
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    29   2.1  

>Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical
           protein T03E6.7 protein.
          Length = 337

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 19/24 (79%), Positives = 23/24 (95%)
 Frame = +3

Query: 9   GYIKMARNRNNHCGIASAASYPLV 80
           GYI++ARNRNNHCG+A+ ASYPLV
Sbjct: 314 GYIRIARNRNNHCGVATKASYPLV 337


>AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine
           receptor, class sx protein5 protein.
          Length = 314

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = -2

Query: 291 TFIYLRDVIIFFSLLLFCNYFFLILFRIPDVK 196
           T I++   ++FF L+ +  +F+++++R PD +
Sbjct: 240 TLIFMMSNLVFFVLISYSQFFYIVIWRSPDYR 271


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = -2

Query: 483 SKLKITYKDKGICFHF*NSVLII*DFLVLFNFIKNICKCVITSSIRYDSLFKI*QLTLGA 304
           S L + Y   G C HF  +   +   L+L  F  ++   +++ S R   L+K        
Sbjct: 69  SDLSLAYISNGFCHHFGPTTCYVGYSLMLHCFSHSLWSLLLSFSYRCYILYKPAPTRPVL 128

Query: 303 VILLTFIYLRDVIIFFSLL 247
           V+++  IY   ++ F S L
Sbjct: 129 VLIIFLIYTPSLLQFVSFL 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,918,376
Number of Sequences: 27780
Number of extensions: 161824
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)