Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H17
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    91   1e-19
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   7.2  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   9.5  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 44/116 (37%), Positives = 66/116 (56%)
 Frame = +1

Query: 1   VARSVLAGIAEGCRQXXXXXXXXETAEMPGMYEPGVYDIAGFALGVVERSHILPRXXXXX 180
           V+ S + G+ +GC+Q        ET+EMPG+Y  G YD  G ++G V R  ILP+     
Sbjct: 549 VSTSFVEGVVKGCKQAGCALVGGETSEMPGLYHDGHYDANGTSVGAVSRDDILPKPESFS 608

Query: 181 XXXXXXXLPSNGVHSNGFSLIHKLMKKNGLTLNDKAPFSQEGLTLGEELIKPTRIY 348
                  L S+GVHSNG+SL+ K+++ + L      P+  + + LG+ L+ PTRIY
Sbjct: 609 KGDILLGLASDGVHSNGYSLVRKIVEYSDLEYTSVCPW-DKNVRLGDSLLIPTRIY 663



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 26/54 (48%), Positives = 32/54 (59%)
 Frame = +3

Query: 402 WHLHPVFAWISDAGAVEDDEMLRTFNCGIGMVVIVSPEDQADVMNSMRSYGAMV 563
           W +  VF W+ DAG V   +M RTFN GIGMVV V+ ED  + M  + S G  V
Sbjct: 708 WEVPEVFKWLKDAGNVPISDMARTFNMGIGMVVAVASEDAEETMKELTSVGETV 761


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 435 DAGAVEDDEMLRTFNCGIGMVVIVSPEDQADV 530
           D+G++    + R F C   MVV++  +D+ DV
Sbjct: 273 DSGSLAQKSLRRLFPCDTSMVVVI--DDRGDV 302


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = -1

Query: 341 RVGFISSSPNVSPS*LKGALSLSVRPFFFISLWMRLKPLLCTPFDGNPMMMSPILTSLIR 162
           R+G + + P++ P    G  SLS RP    S   R + L       NP M SP L S   
Sbjct: 453 RLGDVDTVPDLPPL---G--SLSSRPKPSSSSRRRSQSLSAMLKTSNPYMPSPSLLSGSL 507

Query: 161 GRMCERSTTPRAK 123
               E S++PR +
Sbjct: 508 ANSSEHSSSPRLR 520


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 235 SLIHKLMKKNGLTLNDKAPFSQEGLTLGEELIK 333
           SL+H L   + L   D   +++E  TLG E I+
Sbjct: 4   SLVHSLASSSQLEAFDSFEYAEELCTLGSEWIQ 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,430
Number of Sequences: 5004
Number of extensions: 26631
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)