Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H17
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0558 - 34710345-34710515,34710798-34710956,34711035-347111...   101   7e-22
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    29   4.2  
04_03_0836 - 20198597-20199033,20199164-20199248                       27   9.8  
01_06_1223 + 35502310-35502753,35503461-35503677,35504023-355041...    27   9.8  

>03_06_0558 -
           34710345-34710515,34710798-34710956,34711035-34711146,
           34711293-34711465,34711881-34711940,34712061-34712162,
           34712247-34712353,34712493-34712817
          Length = 402

 Score =  101 bits (241), Expect = 7e-22
 Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = +1

Query: 1   VARSVLAGIAEGCRQXXXXXXXXETAEMPGMYEPGVYDIAGFALGVVERSHILPRXXXXX 180
           +A  V+ GI +GCRQ        ETAEMP  Y+ G YD++GFA+G V++  ++       
Sbjct: 175 LAEKVIKGIVDGCRQSDCALLGGETAEMPDFYKEGEYDLSGFAVGAVKKDKVID-GKNIM 233

Query: 181 XXXXXXXLPSNGVHSNGFSLIHKLMKKNGLTLNDKAPFSQEGL--TLGEELIKPTRIY 348
                  LPS+GVHSNGFSL  ++++K+GL+LND+ P   +G+  T+GE L+ PT IY
Sbjct: 234 EGDIIIGLPSSGVHSNGFSLARRVLEKSGLSLNDQLP-RNDGMITTVGEALMAPTVIY 290



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +3

Query: 402 WHLHPVFAWISDAGAVEDDEMLRTFNCGIGMVVIVSPE 515
           W + PVF WI + G +ED EM RTFN GIGMV++VS E
Sbjct: 335 WEVPPVFRWIQEVGKIEDAEMRRTFNMGIGMVLVVSKE 372


>11_04_0071 -
           13165019-13165082,13165345-13165428,13166325-13166524,
           13166756-13170655
          Length = 1415

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -3

Query: 144 LDDAEGEARDVVDAGLVHAGHLRRLAAQ*RGSGLPAALGDAGEDAP 7
           +D A   AR   D G  H G +RRL +  R   L A L +A E AP
Sbjct: 23  IDAAWAAARAGGDPGRAHGGDVRRLGS--RLQSLHALLSEAQEHAP 66


>04_03_0836 - 20198597-20199033,20199164-20199248
          Length = 173

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 135 AEGEARD-VVDAGLVHAGHLRRLAAQ*RGSGLPAALGDAGE 16
           A G A++ +V A  + A  + R+AA  RG G    LG AGE
Sbjct: 57  AAGVAKEELVAAVRIQAAEVMRVAAPRRGEGQHVLLGTAGE 97


>01_06_1223 +
           35502310-35502753,35503461-35503677,35504023-35504183,
           35504262-35504327,35504474-35504637,35504914-35505028,
           35506050-35506202
          Length = 439

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -1

Query: 203 NPMMMSPILTSLIRGRMCERSTTP---RAKPAMS*TPGSY 93
           N M+ +P+L S   G +  RS      R +PA+S +PGSY
Sbjct: 94  NHMVFTPLLASTCVGTLEFRSVAEPLARIQPAVSKSPGSY 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,954,038
Number of Sequences: 37544
Number of extensions: 237944
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)