Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H17
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5097| Best HMM Match : GARS_A (HMM E-Value=0)                      112   3e-25
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)               30   1.9  
SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)                     29   3.3  
SB_52035| Best HMM Match : RVT_1 (HMM E-Value=0.067)                   28   5.7  

>SB_5097| Best HMM Match : GARS_A (HMM E-Value=0)
          Length = 893

 Score =  112 bits (269), Expect = 3e-25
 Identities = 57/121 (47%), Positives = 73/121 (60%), Gaps = 5/121 (4%)
 Frame = +1

Query: 1   VARSVLAGIAEGCRQXXXXXXXXETAEMPGMYEPGVYDIAGFALGVVERSHILPRXXXXX 180
           VA+ V+ G+AEGC Q        ETAEMPGMY+ G YDIAGFA+G VER  +LPR     
Sbjct: 409 VAKEVVRGVAEGCSQAGCALIGGETAEMPGMYQNGEYDIAGFAVGAVEREQVLPRIQAIK 468

Query: 181 XXXXXXXLPSNGVHSNGFSLIHKLMKKNGLTLNDKAPFS-----QEGLTLGEELIKPTRI 345
                  L S+G+HSNGFSL+ ++++  GL  +  APF      Q   +LG  L+ PTRI
Sbjct: 469 TGDVLIGLASSGIHSNGFSLVRRVIEAAGLEFSCPAPFPTTQGVQSMTSLGMALLAPTRI 528

Query: 346 Y 348
           Y
Sbjct: 529 Y 529



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
 Frame = +3

Query: 387 LNAHWWHLHPVFAWISDAGAVEDDEMLRTFNCGIGMVVIVSPEDQADVMNSMRSYGAMV- 563
           L+A+ W + PVF WI   G V   EM+RTFNCGIG V+IV   D A V++S+R  G  V 
Sbjct: 571 LDANTWKIQPVFGWIWSQGQVATTEMVRTFNCGIGGVLIVEGSDAAFVLDSLRDAGETVW 630

Query: 564 -IGSV 575
            IG V
Sbjct: 631 SIGQV 635


>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
          Length = 1002

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 344 MRVG-FISSSPNVSPS*LKGALSLSVRPFFFISLWMRLKPLLCTPFDGNPMMMSPI 180
           + VG  + S PNV P  +     L+VRP     L   ++P++ +P +  P+M+SP+
Sbjct: 390 LNVGPIVVSPPNVGPIVVS---PLNVRPIMVSPL--NVRPIVVSPLNARPIMVSPL 440


>SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1821

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 205  PSNGVHSNGFSLIHKLMKKNGLTLNDKAPFSQ 300
            P+  VH     L+ + + K G+TLNDK  FS+
Sbjct: 1285 PTQEVHDERVRLVLERLLKAGITLNDKCEFSK 1316


>SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)
          Length = 956

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 205 PSNGVHSNGFSLIHKLMKKNGLTLNDKAPFSQE 303
           P+  VH     L+ +   K G+TLNDK  FS++
Sbjct: 409 PTQEVHDERVRLVLERPLKAGITLNDKCEFSKQ 441


>SB_52035| Best HMM Match : RVT_1 (HMM E-Value=0.067)
          Length = 344

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 205 PSNGVHSNGFSLIHKLMKKNGLTLNDKAPFSQ 300
           P+  VH     L+ + + K G+TLN+K  FS+
Sbjct: 279 PTQEVHDERVHLVLERLLKAGITLNEKCEFSK 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,449
Number of Sequences: 59808
Number of extensions: 240871
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)