Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H17
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical pr...    84   9e-17
AF077529-1|AAC26253.1|  690|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical
           protein F38B6.4 protein.
          Length = 974

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
 Frame = +1

Query: 1   VARSVLAGIAEGCRQXXXXXXXXETAEMPGMYEPGVYDIAGFALGVVERSH-ILPRXXXX 177
           +A  VL  I+E C +        ETAEMPG+Y    +D+AG A+   E +  +LP     
Sbjct: 535 MATQVLTSISEACVEAECSLIGGETAEMPGVYSTHQWDLAGCAIAARESTWPMLPLSSEI 594

Query: 178 XXXXXXXXLPSNGVHSNGFSLIHKLMKKNGLTLNDKAPFSQEGLTLGEELIKPTRIY 348
                   LPS+G+HSNGFSL  K++  NG+  ND  P+  +  T G EL++ T++Y
Sbjct: 595 RDGDVILGLPSSGLHSNGFSLARKILTVNGVKYNDPLPWDSKS-TFGTELLRGTKLY 650



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = +3

Query: 402 WHLHPVFAWISDAGAVEDDEMLRTFNCGIGMVVIVSPEDQADVMNSMRSY 551
           W    +F W++ AG V+  EM+RTFNCGIGMV+IVSP++   V   +R +
Sbjct: 697 WKFREIFNWMAAAGPVDTKEMIRTFNCGIGMVLIVSPDNVEKVKKQLRKH 746


>AF077529-1|AAC26253.1|  690|Caenorhabditis elegans Hypothetical
           protein C09E8.3 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 236 LKPLLCTPFDGNPMMMSPILTSLI 165
           L PL+ TP  G+P+++SP + S I
Sbjct: 629 LNPLILTPMVGSPLILSPFVLSPI 652


>AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1a protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 402 WHLHPVFAWISDAGAVEDDEMLRTFNCGIGMV 497
           WH+ P++ WIS      D+   R   C +G+V
Sbjct: 230 WHIDPMYTWISKMNQENDNRAERLEVC-VGVV 260


>AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1b protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 402 WHLHPVFAWISDAGAVEDDEMLRTFNCGIGMV 497
           WH+ P++ WIS      D+   R   C +G+V
Sbjct: 230 WHIDPMYTWISKMNQENDNRAERLEVC-VGVV 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,748,649
Number of Sequences: 27780
Number of extensions: 165723
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)