Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H17
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55010.2 68416.m06109 phosphoribosylformylglycinamidine cyclo...    97   7e-21
At3g55010.1 68416.m06108 phosphoribosylformylglycinamidine cyclo...    97   7e-21
At5g40210.1 68418.m04879 nodulin MtN21 family protein similar to...    28   6.2  
At4g17410.1 68417.m02607 expressed protein                             27   8.2  

>At3g55010.2 68416.m06109 phosphoribosylformylglycinamidine
           cyclo-ligase, chloroplast /
           phosphoribosyl-aminoimidazole synthetase / AIR synthase
           (PUR5) identical to phosphoribosylformylglycinamidine
           cyclo-ligase, chloroplast precursor SP:Q05728 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF02769
           AIR synthase related protein, C-terminal domain, PF00586
           AIR synthase related protein, N-terminal domain
          Length = 389

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 48/116 (41%), Positives = 69/116 (59%)
 Frame = +1

Query: 1   VARSVLAGIAEGCRQXXXXXXXXETAEMPGMYEPGVYDIAGFALGVVERSHILPRXXXXX 180
           +A  V+ GI EGCRQ        ETAEMP  Y  G YD++GFA+G+V+++ ++       
Sbjct: 164 LAEKVIKGIVEGCRQSECALLGGETAEMPDFYAEGEYDLSGFAVGIVKKTSVI-NGKNIV 222

Query: 181 XXXXXXXLPSNGVHSNGFSLIHKLMKKNGLTLNDKAPFSQEGLTLGEELIKPTRIY 348
                  LPS+GVHSNGFSL+ +++ ++ L+L D  P      TLG+ L+ PT IY
Sbjct: 223 AGDVLIGLPSSGVHSNGFSLVRRVLARSNLSLKDALPGGSS--TLGDALMAPTVIY 276



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
 Frame = +3

Query: 402 WHLHPVFAWISDAGAVEDDEMLRTFNCGIGMVVIVSPEDQADVMNSMRS--YGAMVIGSV 575
           W L P+F WI   G +ED EM RTFN GIGMV++VSPE  + ++  +++  Y A  +G V
Sbjct: 321 WELPPLFKWIQQTGRIEDSEMRRTFNLGIGMVMVVSPEAASRILEEVKNGDYVAYRVGEV 380


>At3g55010.1 68416.m06108 phosphoribosylformylglycinamidine
           cyclo-ligase, chloroplast /
           phosphoribosyl-aminoimidazole synthetase / AIR synthase
           (PUR5) identical to phosphoribosylformylglycinamidine
           cyclo-ligase, chloroplast precursor SP:Q05728 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF02769
           AIR synthase related protein, C-terminal domain, PF00586
           AIR synthase related protein, N-terminal domain
          Length = 389

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 48/116 (41%), Positives = 69/116 (59%)
 Frame = +1

Query: 1   VARSVLAGIAEGCRQXXXXXXXXETAEMPGMYEPGVYDIAGFALGVVERSHILPRXXXXX 180
           +A  V+ GI EGCRQ        ETAEMP  Y  G YD++GFA+G+V+++ ++       
Sbjct: 164 LAEKVIKGIVEGCRQSECALLGGETAEMPDFYAEGEYDLSGFAVGIVKKTSVI-NGKNIV 222

Query: 181 XXXXXXXLPSNGVHSNGFSLIHKLMKKNGLTLNDKAPFSQEGLTLGEELIKPTRIY 348
                  LPS+GVHSNGFSL+ +++ ++ L+L D  P      TLG+ L+ PT IY
Sbjct: 223 AGDVLIGLPSSGVHSNGFSLVRRVLARSNLSLKDALPGGSS--TLGDALMAPTVIY 276



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
 Frame = +3

Query: 402 WHLHPVFAWISDAGAVEDDEMLRTFNCGIGMVVIVSPEDQADVMNSMRS--YGAMVIGSV 575
           W L P+F WI   G +ED EM RTFN GIGMV++VSPE  + ++  +++  Y A  +G V
Sbjct: 321 WELPPLFKWIQQTGRIEDSEMRRTFNLGIGMVMVVSPEAASRILEEVKNGDYVAYRVGEV 380


>At5g40210.1 68418.m04879 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 339

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 561 VIGSVQARPPHGAPVLVDNFAS 626
           +IG++++ P H AP L+DNF S
Sbjct: 319 IIGAIESSPSHNAP-LLDNFKS 339


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 640 VRSMPEAKLSTSTGAPCGGRACTLPI------TIAPYERMLFITSAWSSGE 506
           VR  P   LS +T A  GG     P       T+ P   +  ITSAW+S E
Sbjct: 290 VRCPPPKALSPTTSAASGGEKKPAPSNNNETSTLKPSIEIAEITSAWASAE 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,395,340
Number of Sequences: 28952
Number of extensions: 157942
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)