Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H14
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 232 2e-62
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 41 1e-04
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 29 0.47
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 1.4
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 27 2.5
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 26 3.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 4.4
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 26 4.4
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 5.8
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 232 bits (568), Expect = 2e-62
Identities = 111/191 (58%), Positives = 146/191 (76%), Gaps = 3/191 (1%)
Frame = +1
Query: 1 LVFVIDAQDDYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDGLNDDYKMESQRDIHHRA 180
L+FVIDAQDDY DAL +L +TV + +N NI EVFIHKVDGL+D++K+++QRDI R
Sbjct: 80 LIFVIDAQDDYLDALARLHVTVARVVTINPNICIEVFIHKVDGLSDEFKIDTQRDIQQRT 139
Query: 181 TDDLAEAGLEHVHLSFHLTSIYDHSIFEAFSKVVQKLIPQLPTLEXXXXXXXXXXGIEKA 360
D+LA+ GLE+V +SFHLTSI+DHSIFEAFS+V+QKLIPQLPTLE +EKA
Sbjct: 140 QDELADIGLENVPISFHLTSIFDHSIFEAFSRVIQKLIPQLPTLENLLNIFCSNSLVEKA 199
Query: 361 FLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVXDISCIYGMVDETE---ANTFNNQSSS 531
+LFDV+SKIY+ATDSSPVD+QSYE+C D IDV+ DI IYG + + + +++SS
Sbjct: 200 YLFDVLSKIYVATDSSPVDVQSYEICSDFIDVILDIGSIYGRSSQLKPGHSPEILDETSS 259
Query: 532 LIKLNNGTVLY 564
+I+L+N VL+
Sbjct: 260 VIRLSNDLVLF 270
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 41.1 bits (92), Expect = 1e-04
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Frame = +1
Query: 1 LVFVIDAQD-DYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDGLNDDYK---MESQRDI 168
L++V D + +++ L + + + + IHK+D + +D + E ++ I
Sbjct: 83 LIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCLIHKMDLVQEDLRDLVFEERKAI 142
Query: 169 HHRATDDLAEAGLEHVHLSFHLTSIYDHSIFEAFSKVVQKLIPQLPTLEXXXXXXXXXXG 348
+ DL L TSI+D ++F+A+S +V LIP PTLE
Sbjct: 143 LLETSKDLETTCLA--------TSIWDETLFKAWSAIVYTLIPNTPTLESHLREFAKAAE 194
Query: 349 IEKAFLFDVVSKIYIATDSS 408
+ LF+ + + I++ SS
Sbjct: 195 AAEVILFERTTFLVISSYSS 214
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.47
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 28 DYQDALDKLQLTVTKAYRVNSNIKFEV-FIHKVDGLNDDYKMESQRDIHHRAT 183
D QDA+ LQ ++ Y+V ++K + F +V+G+ D+Y++ R + H AT
Sbjct: 459 DTQDAIVALQEEASEGYKVGLDLKTGMPFDPEVEGIYDNYRV--IRHMLHSAT 509
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 68 LKLIE*TAISSLKYLYIRLMDSMMIIKWNHREIFITELLMILQK 199
LK +E +SSL +++L + + IK IF LL LQK
Sbjct: 182 LKCLEWAVLSSLDSRFLQLSEQIRSIKLFDSSIFSDYLLFFLQK 225
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 94 IKFEVFIHKVDGLNDDYKMESQRD--IHHRATDDLAEAGLEHVHLSFHLTSIYDHSI 258
+K E+ +H G N +E+ + + + ++ EAGL+HV ++F +Y + I
Sbjct: 190 VKDELSLHAYLGENATSVIENHYNTFVTKQTFYEIREAGLDHVRITFPYWILYSNEI 246
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 362 NAFSIPELDIRIFKRFSNVGSCGIN 288
+ F+ PE D +F S G CGIN
Sbjct: 671 DTFNDPEKDAFVFLLSSKAGGCGIN 695
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 481 GMVDETEANTFNNQSSSLIK 540
GM DET + T NN S L++
Sbjct: 300 GMTDETNSLTINNNSDDLLR 319
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 1 LVFVIDAQDDYQDALDKLQLTVT 69
+VF D QD+Y + L+KL+ VT
Sbjct: 450 IVFDSDEQDEYVETLNKLRSNVT 472
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 131 SMMIIKWNHREIFITELLMILQKRD 205
S ++ KWN +IFI+ L++ L + D
Sbjct: 342 SAIVSKWNISKIFISRLVLRLSQSD 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,735
Number of Sequences: 5004
Number of extensions: 39320
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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