Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H14
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169...    29   3.4  
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554...    29   3.4  
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    27   7.8  
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843...    27   7.8  

>06_03_0741 - 24016204-24016298,24016408-24016525,24016805-24016903,
            24016992-24017117,24017200-24017277,24017366-24017554,
            24018186-24018338,24018785-24018898,24019576-24019761,
            24019845-24019970,24020053-24020248,24020338-24020438,
            24020533-24020610,24020707-24020952,24021063-24022253
          Length = 1031

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 297  TAPHIRKSFEYPYI*LRYRKSIPV*CSVKNLYSNRQFSC 413
            T P+ R+   +P   LR  K  P  C V N+Y +R   C
Sbjct: 976  TKPYSREYAAFPAAWLRGAKFWPTTCRVDNVYGDRNLIC 1014


>01_06_0461 + 29553709-29554905,29555051-29555296,29555387-29555464,
            29555557-29555657,29555745-29555940,29556022-29556147,
            29556231-29556416,29556921-29557034,29557522-29557674,
            29558287-29558475,29558568-29558645,29558728-29558853,
            29558942-29559040,29559315-29559432,29559531-29559625
          Length = 1033

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 297  TAPHIRKSFEYPYI*LRYRKSIPV*CSVKNLYSNRQFSC 413
            T P+ R+   +P   LR  K  P  C V N+Y +R   C
Sbjct: 978  TKPYSREYAAFPAAWLRGAKFWPTTCRVDNVYGDRNLIC 1016


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 10  VIDAQDDYQDALDKLQLTVTKAYRVNSNIK 99
           ++ A   Y D +DKL L V  A ++NS IK
Sbjct: 760 MVQALPQYSDQIDKLALHVEIAGKLNSTIK 789


>02_05_0847 +
           32183249-32183486,32184001-32184118,32184231-32184376,
           32184591-32186080
          Length = 663

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 86  TAISSLKYLYIRLMDSMMIIKWNHREIFITELLMILQKRDWSMYTY--HFTSPLYMITLY 259
           +A S   Y+Y+ +    + +  N   IF  E  +IL K +W +     +F   L+M  +Y
Sbjct: 359 SASSLPPYVYLHVEQFRLKLSDN---IFCDEDQLILNKFNWMILKSDSYFAPALFMTPMY 415

Query: 260 LKHLVKLF 283
            K L K+F
Sbjct: 416 EKELEKMF 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,719,344
Number of Sequences: 37544
Number of extensions: 205542
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)