Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H14
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)              121   4e-28
SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.5  
SB_13596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_13112| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)                    27   8.0  
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)               27   8.0  

>SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =  121 bits (292), Expect = 4e-28
 Identities = 54/73 (73%), Positives = 65/73 (89%)
 Frame = +1

Query: 346 GIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVXDISCIYGMVDETEANTFNNQS 525
           GIEKAFLFDVVSKIY+ATDSSPVDMQSYELCCDMIDVV DISCIYG+ ++ + + ++  +
Sbjct: 133 GIEKAFLFDVVSKIYVATDSSPVDMQSYELCCDMIDVVIDISCIYGLREDGDGSAYDVDT 192

Query: 526 SSLIKLNNGTVLY 564
           SS+IKLNN T+LY
Sbjct: 193 SSVIKLNNSTILY 205


>SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
 Frame = +1

Query: 1   LVFVIDAQD-DYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDGLNDDYKMESQRD-IHH 174
           L++V D +  + +  +   Q  +    + + + K    IHK+D + +D     QRD I +
Sbjct: 56  LIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLIHKMDLVQED-----QRDMIFN 110

Query: 175 RATDDLAEAGLEHVHLSFHLTSIYDHSIFEAFSKVVQKLIPQLPTLEXXXXXXXXXXGIE 354
              DDL     + +  +   TSI+D ++++A+S +V +LIP +  LE            +
Sbjct: 111 EREDDLRRLS-KPLECTCFRTSIWDETLYKAWSSIVYQLIPNVTQLEHNLESFASTIDAD 169

Query: 355 KAFLFDVVSKIYIA 396
           +  LF+  + + I+
Sbjct: 170 EVLLFERATFLVIS 183


>SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 103 EVFIHKVDGLNDDYKMESQRDIHHRATDDLAE 198
           EV  HK D +NDDY  + Q DI  R   DL E
Sbjct: 38  EVLDHKTDLMNDDY--DDQPDIRQRRRRDLNE 67


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 103  EVFIHKVDGLNDDYKMESQRDIHHRATDDLAE 198
            EV  HK D +NDDY  + Q DI  R   DL E
Sbjct: 981  EVLDHKTDLMNDDY--DDQPDIRQRRRRDLNE 1010


>SB_13596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +1

Query: 1   LVFVIDAQDDYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDGLNDDYKMESQRDIHHRA 180
           +VFV+   +      D+LQ       ++ SN++ E+F   ++   D Y  E   ++   A
Sbjct: 27  IVFVLRTNNTI--LFDRLQQRGYTGKKLTSNVECEIFQTILEEARDSYNPEIVHELESNA 84

Query: 181 TDDLAEAGLEHV 216
            +DL E  LE +
Sbjct: 85  PEDL-EQNLEQI 95


>SB_13112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -2

Query: 474 TRYIXNYINHITAEFITLHVNR---RTVCCYI 388
           TRY+  Y+N     ++  +V R   R V CY+
Sbjct: 114 TRYMSRYVNRYVTRYVARYVTRYVTRCVTCYV 145


>SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1317

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 7   FVIDAQDDYQDALDKLQLTVTKAYRVNSNIKFEVFIHK 120
           F+ DA+D Y    +K Q+   ++YR  SNI+ +V  H+
Sbjct: 345 FIQDAEDMYDWLNEKHQVASEESYRDLSNIQGKVMKHE 382


>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
          Length = 238

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 23/83 (27%), Positives = 40/83 (48%)
 Frame = +1

Query: 67  TKAYRVNSNIKFEVFIHKVDGLNDDYKMESQRDIHHRATDDLAEAGLEHVHLSFHLTSIY 246
           TK + + + +K+ V       LN D++ E   D  HR     A AG     ++F   + Y
Sbjct: 100 TKGFSLRT-LKYLVMDEADRILNMDFEKE---DYIHRV-GRTARAGRSGRSVTF--VTQY 152

Query: 247 DHSIFEAFSKVVQKLIPQLPTLE 315
           D  +++    ++ K +PQ PT+E
Sbjct: 153 DVELYQRIEHLIAKKLPQYPTVE 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,303,965
Number of Sequences: 59808
Number of extensions: 275473
Number of successful extensions: 2747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2741
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)