Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H14
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.40 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.2  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   2.8  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 425 LCMSTGELSVAI*IFDTTSNRNAFSIPELDIRIFKRFSNVGSCGINF*TTLLNASNIE*S 246
           L + TGE S+ +    T SN+    +    I + + F  VG C I +    LN +  E  
Sbjct: 67  LGIHTGE-SIVVAPSQTLSNKEYNMLRTTAINVIRHFGIVGECNIQY---ALNPNTEEYY 122

Query: 245 YIEV 234
            IEV
Sbjct: 123 IIEV 126


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 522 LIVKCISFSFINHAINTRYIXNYINHITAEFITLHVNRRT 403
           LI+  ++ SF N  ++TR+I       T   I + VN RT
Sbjct: 103 LIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRT 142


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 522 LIVKCISFSFINHAINTRYIXNYINHITAEFITLHVNRRT 403
           LI+  ++ SF N  ++TR+I       T   I + VN RT
Sbjct: 103 LIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRT 142


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 522 LIVKCISFSFINHAINTRYIXNYINHITAEFITLHVNRRT 403
           LI+  ++ SF N  ++TR+I       T   I + VN RT
Sbjct: 103 LIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRT 142


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = +1

Query: 166 IHHRATDDLAEAGLEHVHLSFHLTSIYDHSIFEAFSKVVQKLIPQL 303
           I+ +A DD+++   +  ++   L  I D    +   K +++L+P++
Sbjct: 15  INVKAQDDISKFLKDRPYVQKQLHCILDRGHCDVIGKKIKELLPEV 60


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 134 MMIIKWNHREIFITELLMILQKRDWSMYTYHFT 232
           ++++ W+H+ I   ELL   +  +  +Y  H T
Sbjct: 68  LLLVWWDHKGIVYFELLPPNRTINSVVYIEHLT 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,278
Number of Sequences: 438
Number of extensions: 2390
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)