Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H14
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    29   1.6  
At2g34970.1 68415.m04291 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    29   2.8  
At1g56160.1 68414.m06452 myb family transcription factor (MYB72)...    27   8.7  

>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 127 GLND-DYKMESQRDIHHRATDDLAEAGLEHV 216
           G ND +Y++ES  ++H  +  D+  A +EHV
Sbjct: 414 GSNDFEYRLESVNNVHRLSNQDVNNASVEHV 444


>At2g34970.1 68415.m04291 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q64350
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Rattus norvegicus};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 730

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 10  VIDAQDDYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDGLNDDYKMES 156
           V D  DDY     +++ TV +A  V  NIK ++   +++GL   + MES
Sbjct: 545 VNDPNDDYYYFEKEVEGTVLRA--VEENIKVDLVTMEINGLRLSFNMES 591


>At1g56160.1 68414.m06452 myb family transcription factor (MYB72)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA putative transcription factor
           (MYB72) mRNA, partial cds GI:3941501
          Length = 296

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +1

Query: 19  AQDDYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDGLNDDYKMESQRDIHHRATDDLAE 198
           AQ++    L++ Q + T ++     +  +  +H+V+GLN     E Q  + H   DD+  
Sbjct: 146 AQEEIHSGLNESQNSATSSHHQGECMHTKPELHEVNGLN-----EIQFLLDHDDFDDITS 200

Query: 199 AGLEHVHLSFHLTSI 243
             L+   + F L S+
Sbjct: 201 EFLQDNDILFPLDSL 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,084,770
Number of Sequences: 28952
Number of extensions: 184430
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)