Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H13
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439...    30   1.9  
05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490     29   4.3  
07_03_1157 - 24419157-24419948                                         28   5.6  
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226...    28   5.6  
07_03_1159 - 24427896-24428288                                         28   7.5  
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455...    27   9.9  

>12_02_1032 +
           25542420-25542573,25543511-25543577,25543816-25543918,
           25544435-25544505,25544639-25544702,25545260-25545316,
           25545435-25545593,25545967-25546035,25546111-25546202,
           25546579-25546657,25546923-25547088,25547480-25547604,
           25547737-25548078,25548271-25548432,25548520-25548624,
           25548766-25548860,25548948-25549044,25549848-25550165,
           25550228-25550296
          Length = 797

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 233 GKKVDASPETPEQADQPQPEIPELV 307
           G   DA+ E P+Q  QPQP+ P L+
Sbjct: 700 GHHQDAAAEAPQQQQQPQPQPPPLL 724


>05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490
          Length = 309

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 152 RSGDTPLEEINPYLAEAFHAIPA--GRSVGKKVDASPETPEQADQPQP 289
           RS + P   +  Y+AE  HA+P       G   +  P +P+Q  Q QP
Sbjct: 193 RSPEKPGVLVITYIAEHCHAVPTQLNSLAGTTRNNKPASPDQQQQQQP 240


>07_03_1157 - 24419157-24419948
          Length = 263

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +2

Query: 119 PERPGYVPVYIRSGDTPLEEINPYLAEAFHAIPAGRSVGKKVDASPETPEQADQPQPEIP 298
           P  P  VP + +  + P    +P + E  H  PA   +     A PE P+  + P P +P
Sbjct: 123 PPHPAVVPEFPKHEEPP----HPAVPELPH--PAVPEIPHP--AVPELPKHEEPPHPVVP 174

Query: 299 ELVDP 313
           EL  P
Sbjct: 175 ELPKP 179


>02_05_0902 +
           32620668-32621209,32621847-32622258,32622471-32622675,
           32622712-32622806,32622945-32623557,32623652-32623820,
           32624392-32624749,32625226-32625336,32626207-32626561,
           32627262-32627484,32627837-32628058,32628628-32628781
          Length = 1152

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 108 GSFYRRDRVTYRST*GPEIRHLKRL 182
           GS YR D   Y+S   PE R LKRL
Sbjct: 177 GSIYRMDIARYKSQNMPEARGLKRL 201


>07_03_1159 - 24427896-24428288
          Length = 130

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 248 ASPETPEQADQPQPEIPELVDP 313
           A PE P+  + P PE+PEL  P
Sbjct: 68  AVPEFPKVPELPHPEVPELPKP 89


>02_05_0869 -
           32344821-32344916,32345255-32345347,32345418-32345551,
           32345863-32346013,32346337-32346407,32346683-32346828,
           32347172-32347221,32347552-32347628,32347716-32347776,
           32347859-32347912,32347999-32348058,32348491-32348624,
           32349740-32350418
          Length = 601

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 119 PERPGYVPVYIRSGDTPLEEINPYLAEAFHAIPAGRSVGKKVDASPETPEQ-ADQPQPEI 295
           P+   +VP  + +   P+E++ P      + +P  ++   +V A P+   + A++ Q +I
Sbjct: 455 PDLADFVPSGVPNSAEPIEKVTPTNVPRQNDVPKEKTCLPEVKAKPKVQNKGAEKTQSKI 514

Query: 296 P 298
           P
Sbjct: 515 P 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,815
Number of Sequences: 37544
Number of extensions: 243094
Number of successful extensions: 729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)