Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H13
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.9  
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 717

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 224 RSVGKKVDASPETPEQADQPQPEIPELVDPIHYPY 328
           + + ++V   PE+   +D P P+IP +V P H P+
Sbjct: 97  KGIARRVSNVPESDPASDPPSPDIPVVV-PDHRPF 130


>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 110 QFLPERPGYVPVYIRSGDTPLEEINPYLAEAFHAIPAGRSVGKKVDASPETPEQAD 277
           +F+P RPG   V++R    P+E  +P+L      I  G     +VD + ET   A+
Sbjct: 842 KFIPNRPGTYKVHVRCDGEPVEN-SPFL------IKVGEPEPVQVDLTLETTSGAE 890


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,626,117
Number of Sequences: 59808
Number of extensions: 297991
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)