Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H13
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    29   3.6  
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ...    28   6.2  

>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/77 (25%), Positives = 25/77 (32%)
 Frame = +2

Query: 92  EARPKWQFLPERPGYVPVYIRSGDTPLEEINPYLAEAFHAIPAGRSVGKKVDASPETPEQ 271
           E  P+    P   G+ P    +  +PL   NP         P G S      A P     
Sbjct: 346 ELAPEPSLSPPTKGFAPASAPTKHSPLPPRNPPCPYEQRR-PKGNSALNHHTAPPTPAPH 404

Query: 272 ADQPQPEIPELVDPIHY 322
             QP P  P    P H+
Sbjct: 405 RSQPHPPAPNPAPPRHH 421


>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
           protein predicted proteins - Arabidopsis thaliana
          Length = 259

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 221 GRSVGKKVDASPETPEQADQPQPEIPELVDPIH 319
           G+   +KV+A  E P Q  Q Q ++PE   PIH
Sbjct: 222 GQKTKEKVEA--EQPSQPAQSQQQLPEGYSPIH 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,490,363
Number of Sequences: 28952
Number of extensions: 205839
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)