Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H12
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   1.2  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    26   1.5  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.5  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   4.7  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    24   6.2  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    24   6.2  
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    24   6.2  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    24   8.2  
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...    24   8.2  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    24   8.2  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    24   8.2  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    24   8.2  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 114 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDYYTN*KAVE 236
           K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
 Frame = +3

Query: 99  VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDYYTN*KAVEEFL 245
           VER+K++ +L Q  D + ++DE YY +  D Y+   EA    +TN + V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +3

Query: 3   VLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDEYY 170
           ++  A +I   +++  +   +H   +D   V  + QK+      S   D D+  V DE+ 
Sbjct: 30  IMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDEFM 89

Query: 171 KIGKDYDVEA 200
           +I +++ ++A
Sbjct: 90  QIKEEFPMKA 99


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 99  VERQKKVLSLFQDVDQVNVDDEYY 170
           +ER+KK L+L +  D + V+DE Y
Sbjct: 221 LERRKKFLTLAKKYDIIIVEDEPY 244


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 132 QDVDQVNVDDEYYKIGK 182
           Q+  + N+DDEY+++G+
Sbjct: 65  QEETETNLDDEYHRLGE 81


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 132 QDVDQVNVDDEYYKIGKDYDVEANID 209
           Q+V Q+N +DEY +   + D EA ID
Sbjct: 55  QNVMQMNFEDEYSEFSNE-DDEAEID 79


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 300 VEDGELIVLGKITDSEQCSRILQQLSNWCSNRCW 199
           + + E + L K  +SEQ    LQQ  +  ++ CW
Sbjct: 12  LSESEQLELSKFIESEQQKVKLQQAIHQFTSTCW 45


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 45  VVSPKTYHFKTK-DVDAVFVERQKKVLSLFQDVDQVNVD 158
           V+ PKT+H+K    +   F + QKK+     DV     D
Sbjct: 234 VIEPKTFHYKNGISISMKFDKDQKKL--FINDVSTTKYD 270


>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +3

Query: 108 QKKVLSLFQDVDQVNVDDEY 167
           ++++ SL  ++++ N+DDEY
Sbjct: 189 RERLRSLADEIEEENIDDEY 208


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 108 QKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDY 212
           +K   S F+D  + +  V+ EY+K+ KD +    ++Y
Sbjct: 363 KKNYFSKFKDSEITEDIVEKEYWKLVKDNNTSLEVEY 399


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 105 RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDYYT 218
           R +   SL Q ++  NV+ EY ++  +  ++ NI+Y++
Sbjct: 82  RARCTASLLQQLNP-NVEMEYLEMSPEALIDKNIEYFS 118


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 247 TLFRIGYLPKYYEFSIFYQKLREEAIALFHLFYYA 351
           TLF  GYL   Y  +I  QK R       ++F ++
Sbjct: 119 TLFYAGYLVAQYPAAILMQKCRLSYFIFCNVFLWS 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,169
Number of Sequences: 5004
Number of extensions: 24534
Number of successful extensions: 93
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)