Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H12
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0033 + 27820563-27823482,27823593-27823996                       30   0.63 
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368           27   4.4  
01_04_0006 - 15001969-15002078,15002160-15002224,15002324-150024...    27   4.4  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    27   5.9  
07_03_0154 + 14509979-14512033                                         27   5.9  
01_04_0002 - 14975469-14975578,14975668-14975732,14975858-149759...    27   5.9  
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482...    26   7.7  

>11_08_0033 + 27820563-27823482,27823593-27823996
          Length = 1107

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 47  GVTENVSLQDKRCRRSVCGAPEKGFIPFP 133
           GV  N++L+  R    +CG+P  G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737


>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
          Length = 601

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 5   PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 148
           PS + A    + Q GV  +VSL+     ++   + +K + PF  C PS
Sbjct: 296 PSPTKAQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPS 343


>01_04_0006 -
           15001969-15002078,15002160-15002224,15002324-15002409,
           15003243-15003341,15003556-15003649,15004813-15004982,
           15005322-15005417
          Length = 239

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 202 TSITTPIRKLLKNS*TLFRIGYLPKYYEFSIF 297
           T    P+ K ++NS T   IG+ PKY  F+ F
Sbjct: 203 TGTDGPLGKRMENSKTRAEIGWQPKYPSFTEF 234


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 346 SRTSGKEQ*PLPLAFGRRWRTHSTWED 266
           SRT G    P P    RRWR H   +D
Sbjct: 404 SRTRGARNSPPPPTSARRWRPHPPADD 430


>07_03_0154 + 14509979-14512033
          Length = 684

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 5   PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRP 145
           PSSS    P A    +  N     KR  +S   +PE+G +P P   P
Sbjct: 7   PSSSAPSSPAASSDSIDLNFLPFLKREPKSEPASPERGPLPLPAAAP 53


>01_04_0002 -
           14975469-14975578,14975668-14975732,14975858-14975943,
           14976838-14976890,14977168-14977189,14978557-14978650,
           14979101-14979273,14979543-14979658,14979817-14979994
          Length = 298

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 202 TSITTPIRKLLKNS*TLFRIGYLPKYYEFSIF 297
           T    P+ K ++NS T   IG+ PKY  F+ F
Sbjct: 262 TGTDGPLGKKMENSRTRSEIGWEPKYPSFTEF 293


>02_02_0455 +
           10445417-10446931,10447370-10447903,10448198-10448278,
           10448699-10448770,10449643-10449669
          Length = 742

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -3

Query: 267 ITDSEQCSRILQQLSN----WCSNRCWLQRHSPFQFCSIHHQ 154
           I+D E+ S + Q L N    WC +  ++    P  F ++ HQ
Sbjct: 669 ISDCEKLSNLNQFLQNLDIKWCPSLTFIGESEPADFTNLSHQ 710


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,855,439
Number of Sequences: 37544
Number of extensions: 156800
Number of successful extensions: 382
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)