Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H12
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)                    30   0.65 
SB_27398| Best HMM Match : DUF1096 (HMM E-Value=2.3)                   28   2.6  
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)                       28   2.6  
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_59317| Best HMM Match : APT (HMM E-Value=7.8)                       27   4.6  
SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)                      27   4.6  
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)                27   6.1  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   6.1  
SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)                     27   6.1  
SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   26   8.0  

>SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)
          Length = 708

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 150 NVDDEYYKIGKDYDVEANIDYYTN*KAVEEFLN 248
           N D+EY K   +Y+VE   DY  N +A E  +N
Sbjct: 100 NDDEEYMKDMPEYNVETKADYKGNEEAAEWLMN 132


>SB_27398| Best HMM Match : DUF1096 (HMM E-Value=2.3)
          Length = 200

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 270 KITDSEQCSRILQQLSNWCSNRC--WLQRHSPFQ 175
           K  DS+ C+  +QQ+ + C NRC   L+R   F+
Sbjct: 158 KCFDSQSCNSCIQQVYSPCFNRCQEMLRRREAFK 191


>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
          Length = 62

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 41  QCGVTENVSLQDKRCRRSVCG 103
           +C + +NV   D+ CRRS CG
Sbjct: 29  KCHMEKNVIFDDRACRRSRCG 49


>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 78  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANI 206
           KD D   V +QK VL + + +  +++     K+ +DY VE ++
Sbjct: 401 KDADIAPVPKQKPVLDINKHLRPISLTPVLSKLAEDYIVEQHL 443


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 15   AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGK 182
            +G+I L + + V+   Y+FK K  D +F      +L +   +DQ N   ++   G+
Sbjct: 1370 SGIITLSREAPVNVWEYNFKVKATDGIFTATTDVLLDI---IDQNNHKPQFTNCGE 1422


>SB_59317| Best HMM Match : APT (HMM E-Value=7.8)
          Length = 229

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 78  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANI 206
           KD D   V +QK VL + + +  +++     K+ +DY VE ++
Sbjct: 35  KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHL 77


>SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)
          Length = 279

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 78  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANI 206
           KD D   V +QK VL + + +  +++     K+ +DY VE ++
Sbjct: 108 KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHL 150


>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 111 KKVLSLFQDVDQVNVDDEYYKIGKDY 188
           ++ +SLF+DVD+   D+ Y KI   Y
Sbjct: 93  ERCISLFKDVDKYKHDERYLKIWIQY 118


>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
          Length = 1130

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 285 LIVLGKITDSEQCSRILQQLSNWCSNRC 202
           ++V  + T SE C  + + LS+  SNRC
Sbjct: 11  ILVCPQSTKSESCEELFKALSDGGSNRC 38


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 3   VLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQ 110
           +++LA ++A V   +V+PK    K +D+D  ++E +
Sbjct: 618 LVILAMIVAAVVIIIVAPKCAKAKVRDMDKSWLENE 653


>SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)
          Length = 602

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 78  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANI 206
           KD D   V +QK +L + + +  +++     K+ +DY VE ++
Sbjct: 347 KDADIAPVPKQKPILDVNKHLRPISLTPVLSKLAEDYVVEQHL 389


>SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 135 DVDQVNVDDEYYKIGKDYDVEANID--YY 215
           D D  N+DD+Y   G D D + N+D  YY
Sbjct: 186 DNDDNNLDDDYGTYGDDNDDDDNLDDVYY 214


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 78  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANI 206
           KD D   V +QK VL + + +  +++     K+ +DY VE ++
Sbjct: 681 KDADIAPVPKQKPVLDVNKHLWPISLTPVLSKLAEDYVVEQHL 723


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 78  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANI 206
           KD D   V +QK VL + + +  +++     K+ +DY VE ++
Sbjct: 392 KDADIAPVPKQKPVLDVNKHLWPISLTPVLSKLAEDYVVEQHL 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,310,993
Number of Sequences: 59808
Number of extensions: 186470
Number of successful extensions: 1152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)