Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H12
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39080.1 68415.m04802 expressed protein                             31   0.30 
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   2.1  
At5g07940.1 68418.m00920 expressed protein                             27   5.0  
At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    26   6.6  
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    26   6.6  
At4g22320.1 68417.m03227 expressed protein                             26   8.7  

>At2g39080.1 68415.m04802 expressed protein 
          Length = 351

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 202 TSITTPIRKLLKNS*TLFRIGYLPKYYEFSIFY 300
           TS + P+ K L NS T   IG+ PKY  F+ F+
Sbjct: 315 TSTSGPLGKKLNNSKTRAEIGWEPKYPSFAQFF 347


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 27  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 179
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At5g07940.1 68418.m00920 expressed protein
          Length = 1526

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  NVSLQDKRCRRSVCGAPEKGFIPFP 133
           N+S QDK C+    G  EK F+  P
Sbjct: 393 NISAQDKFCQMEDSGPAEKSFMKVP 417


>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 12  LAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY 167
           +AG +A + S+  +P  YH   K  + +  E+ +  +S F     +NVD  +
Sbjct: 490 IAGALAYLHSAASTP-VYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTH 540


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 12  LAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY 167
           +AG +A + S+  +P  YH   K  + +  E+ +  +S F     +NVD  +
Sbjct: 527 IAGALAYLHSAASTP-VYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTH 577


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 78  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDYYTN*KAVEE 239
           K V    +E QKK ++  ++ D++  DD   KI +D  VE   D     K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,242,138
Number of Sequences: 28952
Number of extensions: 127781
Number of successful extensions: 334
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)