Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H11
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0313 + 14233049-14234362,14234558-14235523 31 0.82
07_03_1547 + 27623945-27625612 29 1.9
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 29 2.5
08_02_1427 - 27020819-27020918,27021017-27021081,27021160-270212... 28 4.4
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 28 4.4
04_03_1003 - 21631188-21631274,21631939-21632043,21632171-216322... 28 5.8
08_02_1094 + 24275719-24277029 27 7.7
02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209 27 7.7
>04_03_0313 + 14233049-14234362,14234558-14235523
Length = 759
Score = 30.7 bits (66), Expect = 0.82
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 310 LKYFLLKHECGWSLNTTLISFRVSSVAPNDSADIIVHADSPDVTKWLSVFRLTRVTSSSV 131
L+Y + H C L +R+ S+ D+ + A SPDVTK +++ RL T+ ++
Sbjct: 586 LRYLDISHSCVKELPEKF--WRLYSLQVVDARRSSLRAISPDVTKLINLRRLALPTNCAL 643
Query: 130 KL 125
KL
Sbjct: 644 KL 645
>07_03_1547 + 27623945-27625612
Length = 555
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 101 HIFEEVIVQLY---R*TCDSSQSKNGKPFRHIRTISMDDYIGAI 223
H F EVI L T D ++ GK RH RT+ D Y G I
Sbjct: 285 HCFPEVIAGLRIHGELTVDPEKTPEGKSIRHFRTLLDDAYRGRI 328
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 29.1 bits (62), Expect = 2.5
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Frame = +3
Query: 141 LVTRVNRKTESHFVTSGL--SAWTIISALSLGATDETLNEINVVLRLHPHSCFNRKYFNI 314
L+ ++R HFV L S W +++ + +TD N++ +V++ + Y +
Sbjct: 19 LLVALSRCASHHFVAMFLLVSDWWVVAMMQKKSTDNINNKLQLVMK---SGKYTLGYKTV 75
Query: 315 LKEIGENDGGVLKLSGAIFTDLKMSVYEQFKQDVQMTGVSKVNELPWDNNTATATAINDF 494
LK + + G ++ L+ L+ S E + M G V+ NN TA +
Sbjct: 76 LKTLRNSKGKLIILANNC-PPLRKSEIEYY----AMLGKVSVHHF-HGNNVDLGTACGKY 129
Query: 495 VRLATHEAID 524
R+ ID
Sbjct: 130 YRVCCLSIID 139
>08_02_1427 -
27020819-27020918,27021017-27021081,27021160-27021246,
27021398-27021466,27022168-27022219,27022443-27022525,
27022677-27022753,27022880-27023074,27023204-27023261,
27023862-27023956,27024605-27024758
Length = 344
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 554 PIQITWCYYLIYSFVSCQSNEIIYSS 477
P+ I W YYLI + ++N I+ S
Sbjct: 81 PLTIKWYYYLILGIIDVEANYIVVKS 106
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 291 FNRKYFNILKEIGENDGGVLKLSGAIFTDLKMSVY-EQFKQD 413
F+ YF +KE + D VL A+F D VY E++ +D
Sbjct: 285 FDNSYFKDIKEQRDQDLLVLPTDAALFEDPSFKVYAEKYAED 326
>04_03_1003 -
21631188-21631274,21631939-21632043,21632171-21632248,
21632337-21632411,21632908-21632994,21633091-21633158,
21633478-21633565,21633684-21633784,21633831-21633990,
21635088-21635246,21635351-21635527
Length = 394
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 291 FNRKYFNILKEIGENDGGVLKLSGAIFTDLKMSVY-EQFKQD 413
F+ YF +KE + D VL A+F D VY E++ +D
Sbjct: 299 FDNSYFKEIKEKRDQDLLVLPTDAALFEDPTFKVYAEKYAED 340
>08_02_1094 + 24275719-24277029
Length = 436
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 132 TDELVTRVNRKTESHFVTSGLSAWTII 212
T V V RKT H + + +SAWT++
Sbjct: 207 TGPKVAGVARKTSPHVLAAAVSAWTLV 233
>02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209
Length = 455
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 56 NNEKFIRKLR*LLGSHIFEEVIVQLYR*TCDSSQSKNGKPFRHIRT 193
N+E IR +R ++ + + E I R C+ + KN +P R+ T
Sbjct: 373 NDENLIRYIRLVMDAAVNLEDIFLYKRMACEKCKGKNPRPLRYPST 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,868,019
Number of Sequences: 37544
Number of extensions: 235102
Number of successful extensions: 645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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