Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H11
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein ... 44 1e-04
U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein ... 44 1e-04
U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein ... 44 1e-04
AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or cys... 44 1e-04
AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or cys... 44 1e-04
AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or cys... 44 1e-04
AF024503-9|AAG24084.1| 327|Caenorhabditis elegans Serpentine re... 31 0.43
U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear fa... 30 0.98
U21308-8|AAN60509.2| 807|Caenorhabditis elegans Nfi (nuclear fa... 30 0.98
U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear fa... 30 0.98
>U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform a protein.
Length = 366
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 186 SGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRKYFNILKEIGENDGGV-LKLS 359
S LS +S + + A ET ++I L + + + NI + + G +KL+
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 360 GAIFTDLKMSVYEQFKQDVQMTGVSKVNELPWDNNTATATAINDFVRLATHEAIDEIV 533
+FT + + + DV+ + + L +DN ATA AIN+FVR T + I +I+
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKII 145
>U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform b protein.
Length = 366
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 186 SGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRKYFNILKEIGENDGGV-LKLS 359
S LS +S + + A ET ++I L + + + NI + + G +KL+
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 360 GAIFTDLKMSVYEQFKQDVQMTGVSKVNELPWDNNTATATAINDFVRLATHEAIDEIV 533
+FT + + + DV+ + + L +DN ATA AIN+FVR T + I +I+
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKII 145
>U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein 7,
isoform c protein.
Length = 365
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 186 SGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRKYFNILKEIGENDGGV-LKLS 359
S LS +S + + A ET ++I L + + + NI + + G +KL+
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 360 GAIFTDLKMSVYEQFKQDVQMTGVSKVNELPWDNNTATATAINDFVRLATHEAIDEIV 533
+FT + + + DV+ + + L +DN ATA AIN+FVR T + I +I+
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKII 145
>AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 365
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 186 SGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRKYFNILKEIGENDGGV-LKLS 359
S LS +S + + A ET ++I L + + + NI + + G +KL+
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 360 GAIFTDLKMSVYEQFKQDVQMTGVSKVNELPWDNNTATATAINDFVRLATHEAIDEIV 533
+FT + + + DV+ + + L +DN ATA AIN+FVR T + I +I+
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKII 145
>AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 186 SGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRKYFNILKEIGENDGGV-LKLS 359
S LS +S + + A ET ++I L + + + NI + + G +KL+
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 360 GAIFTDLKMSVYEQFKQDVQMTGVSKVNELPWDNNTATATAINDFVRLATHEAIDEIV 533
+FT + + + DV+ + + L +DN ATA AIN+FVR T + I +I+
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKII 145
>AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 186 SGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRKYFNILKEIGENDGGV-LKLS 359
S LS +S + + A ET ++I L + + + NI + + G +KL+
Sbjct: 28 SPLSIALALSLVHVAAKGETRDQIREALVKGSTDEQLEQHFANISAALLAAERGTEVKLA 87
Query: 360 GAIFTDLKMSVYEQFKQDVQMTGVSKVNELPWDNNTATATAINDFVRLATHEAIDEIV 533
+FT + + + DV+ + + L +DN ATA AIN+FVR T + I +I+
Sbjct: 88 NHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFDNKEATAEAINNFVRENTGDHIKKII 145
>AF024503-9|AAG24084.1| 327|Caenorhabditis elegans Serpentine
receptor, class h protein266 protein.
Length = 327
Score = 31.5 bits (68), Expect = 0.43
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -3
Query: 352 FKTPPSFSPISFKILKYFLLKHECGWSLNTTLISFRVSSVAPNDSADIIVHADSP-DVTK 176
F+TP + + + ++ + C W L I + + I+ + D P D+
Sbjct: 31 FQTPKTMGSVKYVMMNFHAWCILCDWMLAVMTIPYLLFPAMVGFPLGILKYFDVPIDIQV 90
Query: 175 WLSVFRLTRVTSSSVKLYNDLFKNV*AQKS 86
+L +T V SS V ++ + + + AQK+
Sbjct: 91 YLVAVGITAVYSSIVLIFENRYYMMFAQKT 120
>U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform b protein.
Length = 787
Score = 30.3 bits (65), Expect = 0.98
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 126 NFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRK 302
N D V V+ + H + A I++ALS T ++ E V R+HPH+ + +
Sbjct: 446 NHGDVGVVVVDERNREHVI----HAQHIVNALSSLRTTPSMRESPVGRKRMHPHTSNSFE 501
Query: 303 YFNILKEIGENDGGV 347
+ N +E+ +N+G +
Sbjct: 502 FLNCNQEMNKNEGAL 516
>U21308-8|AAN60509.2| 807|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform a protein.
Length = 807
Score = 30.3 bits (65), Expect = 0.98
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 126 NFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRK 302
N D V V+ + H + A I++ALS T ++ E V R+HPH+ + +
Sbjct: 466 NHGDVGVVVVDERNREHVI----HAQHIVNALSSLRTTPSMRESPVGRKRMHPHTSNSFE 521
Query: 303 YFNILKEIGENDGGV 347
+ N +E+ +N+G +
Sbjct: 522 FLNCNQEMNKNEGAL 536
>U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform c protein.
Length = 823
Score = 30.3 bits (65), Expect = 0.98
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 126 NFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETLNEINVVL-RLHPHSCFNRK 302
N D V V+ + H + A I++ALS T ++ E V R+HPH+ + +
Sbjct: 482 NHGDVGVVVVDERNREHVI----HAQHIVNALSSLRTTPSMRESPVGRKRMHPHTSNSFE 537
Query: 303 YFNILKEIGENDGGV 347
+ N +E+ +N+G +
Sbjct: 538 FLNCNQEMNKNEGAL 552
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,557
Number of Sequences: 27780
Number of extensions: 229657
Number of successful extensions: 574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -