Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H10
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   0.80 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   1.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   1.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   2.4  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   3.2  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.3  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   5.6  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   5.6  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    24   9.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   9.8  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    24   9.8  
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    24   9.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    24   9.8  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    24   9.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +1

Query: 34   LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 144
            LSI+ AK  TI  +  +  + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 174 LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 266
           L+ SYY PF    DN  ++ V  YEA +  +
Sbjct: 20  LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 292 PYRKANSNRMARKLISTMNRPLTLVGNYGQETANLYEKKFPRDFHESYELVARHV 456
           PY       +A+KL+ T+NR   L     +  + LYEKK  +   +SY +   HV
Sbjct: 761 PYFSLEKVTIAKKLLDTVNRQWIL-----ECISQLYEKK--KSVSQSYYIFVSHV 808


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 255 RFLDIFEKTFVQSLQKGKFESYG-KKID-FHDEQA 353
           +FL+I+ +T +  L  G  E  G KK++ +HD +A
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKA 640


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 120 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 212
           G  P+  +Y P +  YYP   +Y  P   +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +3

Query: 63  NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 233
           NFY  +    YF   T G+ S+P F   +      YP   S Y P    P   ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 273 EKTFVQSLQKGKFESYGKKIDFHDEQAIN 359
           EKT V+S+ K +  + G   DFH E A N
Sbjct: 12  EKTHVESIVKFEDSNRGTITDFHIETANN 40


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -3

Query: 212 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 84
           RP +  ++V SH+ I+++L +     RVP    YG     KT  ++ C
Sbjct: 30  RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 255 RFLDIFEKTFVQSLQKGKFESYGKKIDFHDEQ 350
           RF +++EK +V  L + K  +  +K   +DEQ
Sbjct: 381 RFREMYEKAYVSKLSEQKKGNGTQKAILNDEQ 412


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 255 RFLDIFEKTFVQSLQKGKFES 317
           RF+DIFE+TF  S +  KF S
Sbjct: 528 RFIDIFEQTF-SSKKNAKFIS 547


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 6   WWSSERYGNLKHRRGEIYYNFYQQL--TTRYYFER 104
           +WS+    N K  R E Y NF++ +  T  ++ ER
Sbjct: 282 FWSNFEIANFKFFRNEQYENFFRTMDATGGFWTER 316


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 430 IRENPLETFSHTDWPFLAHSFRPKLMACSSW 338
           + E   E  +    PFL  SF P+L A + W
Sbjct: 187 VHEGNKEIVAVEQGPFLGTSFHPELTADNRW 217


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
            family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 99   RSNNVLLIVGRNCNIFRHG 43
            R+N+ L+I G  C +FR G
Sbjct: 963  RNNDFLIIYGIGCEVFRLG 981


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 327 KIDFHDEQAINFGRKL 374
           +ID+H E+ INFG K+
Sbjct: 163 RIDYHLERLINFGLKV 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,845
Number of Sequences: 5004
Number of extensions: 44534
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)