Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H10
(463 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.81
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14) 29 1.9
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 28 4.3
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 5.7
SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_16212| Best HMM Match : Apyrase (HMM E-Value=0) 27 10.0
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 27 10.0
SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012) 27 10.0
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.3 bits (65), Expect = 0.81
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 159 TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 329
T Y P T S Y Q+P+N++LH +A+ T L GKF+S G+
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770
Query: 330 IDFHD 344
D H+
Sbjct: 4771 RDVHE 4775
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 351 PVHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 220
P H NQ C IC+ G KS KCP L S RC C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288
>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
Length = 869
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 34 LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 159
+ +A AKYI +S + + VI + S + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 277 RLSYSPYRKANSNRMARKLISTMNRPLTLVGNYGQETANLYEKKFPRDFHESYELVARHV 456
R+ +PYR A + ++A+ T + L+L GN ++ + EK PR L +RHV
Sbjct: 265 RVIGAPYRSA-ATKLAKDAAVT-RKTLSLQGNTQRQERLVQEKTSPRQQKSQPSLSSRHV 322
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 334 ISTMNRPLTLVGNYGQETANLYEKKFPRDFHESY 435
+S NRP T +GNYG + Y K P + +Y
Sbjct: 143 VSLPNRPAT-IGNYGASDSPPYSKGMPINLQAAY 175
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 5.7
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +3
Query: 78 LTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQR-PDNYNLHSVKNYEAI 254
LTTR + + LG+ P YSP TG P + Y P + N N + A+
Sbjct: 700 LTTRQLLQVILLCLGTSPTSPQYSPASTG--PSPSPEYSPSSPNYTPNINTSAYSLVPAL 757
Query: 255 RFLDIFEKTFVQS---LQKGKFESYGKKIDFHDEQAINFGRKLW 377
L I+ K ++ ++ + E+ KIDF ++ + G W
Sbjct: 758 TPL-IYPKDLTKAKKMTKQNRKENKSDKIDFLEQDPLPEGGWGW 800
>SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 403 SHTDWPFLAHSFRPKLMACSSWKSIFLPYDSNL 305
SH WP +F+ L+ C K I + NL
Sbjct: 466 SHASWPISLQTFKDILLCCQDLKKISISKMENL 498
>SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)
Length = 372
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 218 LQSTQRKELRSNTVLGHF*KDFRTVPTERQIRIVWQE 328
L + NT HF + + TV +R I I W E
Sbjct: 84 LDENSKSSTMKNTWTSHFKRGYLTVHPDRTISIEWDE 120
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 165 YYPLMTSYYFPFAQRPDNYN 224
Y PL T+ ++ + RP NYN
Sbjct: 1560 YSPLSTAPFYDYGYRPQNYN 1579
>SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012)
Length = 89
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 19 RDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLGTRLLR 159
+ +VTL I ++ S N+ +H + + +VPY +S+ T LL+
Sbjct: 29 KSLVTLGIVISTLAENSLNSYEHTKKLAYRKKLFVPYRDSVLTFLLK 75
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 212 RPLSEWEIV*SHQGIVTSLN 153
RPL +W IV ++QG + S+N
Sbjct: 3254 RPLEDWPIVPTNQGTLVSVN 3273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,265,799
Number of Sequences: 59808
Number of extensions: 305045
Number of successful extensions: 824
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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