Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H10
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    29   1.2  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    29   1.2  
Z69634-1|CAA93450.2|  271|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/71 (21%), Positives = 34/71 (47%)
 Frame = +3

Query: 165 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 344
           Y P + S +  F   P ++NL+   +     F+     T + + +K K E++  ++  H 
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMH- 57

Query: 345 EQAINFGRKLW 377
           +  I+  +++W
Sbjct: 58  QHRISKKKRIW 68


>Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/71 (21%), Positives = 34/71 (47%)
 Frame = +3

Query: 165 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 344
           Y P + S +  F   P ++NL+   +     F+     T + + +K K E++  ++  H 
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMH- 57

Query: 345 EQAINFGRKLW 377
           +  I+  +++W
Sbjct: 58  QHRISKKKRIW 68


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 348 VHRGNQFSCHTIRICLSVGTVRKSFQKCPRT 256
           V RG+++ C  +  CL V T+R   +KC  T
Sbjct: 41  VVRGHEYRCKQMENCLIVSTIRNMCKKCRYT 71


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 348 VHRGNQFSCHTIRICLSVGTVRKSFQKCPRT 256
           V RG+++ C  +  CL V T+R   +KC  T
Sbjct: 33  VVRGHEYRCKQMENCLIVSTIRNMCKKCRYT 63


>Z69634-1|CAA93450.2|  271|Caenorhabditis elegans Hypothetical
           protein B0001.1 protein.
          Length = 271

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 129 PEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAI 254
           P++S + P  +  Y L  S Y     RP  Y+  + +  E++
Sbjct: 56  PQYSHFQPAGSKPYTLFKSVYTNSTNRPQEYSFKTERTTESL 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,283,004
Number of Sequences: 27780
Number of extensions: 239479
Number of successful extensions: 515
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)