Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H09
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   1.8  
SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos...    25   1.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    24   3.2  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    23   4.2  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    23   5.5  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    23   5.5  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   5.5  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    23   5.5  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    23   7.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    23   7.3  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    22   9.7  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    22   9.7  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    22   9.7  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    22   9.7  

>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 2   GAVPRGAVPPRADRVLRDLQG 64
           G V RG +P   DR+L  LQG
Sbjct: 477 GHVQRGGIPCAYDRMLATLQG 497


>SPBC31F10.09c |nut2|med10|mediator complex subunit
           Med10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 11  PRGAVPPRADRVLRDLQGNAGVQRERNVRLP 103
           P  A+P   D ++RDL+    + R+ N  +P
Sbjct: 34  PSDAIPESLDTLIRDLKSLPDISRKVNNLIP 64


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -1

Query: 200  LGLALHAQVVGGELAPLGQVAHYVEQPVAHAPREV*HFV-LAALRHFPASPVVLDLHVVV 24
            L L L   +   +L        +  Q + +A   +  F  L +LRH P S  +LD +V  
Sbjct: 1193 LELCLRMNIESIDLQEYAPNIRFTAQKLFNATTSLREFAALKSLRHLPLSQRILDANVTR 1252

Query: 23   L 21
            L
Sbjct: 1253 L 1253


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 75  TPAFPCKSRSTRSARGGTAPRGTA 4
           TP+  C ++ T   R GT P GT+
Sbjct: 352 TPSLACANKCTFCWRHGTNPVGTS 375


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 45  YYGTCREMPECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHY 176
           +YG  R + + SE   ++  R  R W   +M  L    +  P Y
Sbjct: 708 FYGDTRNLDKASEKLRAEHDRTRRLWKPVLMDSLFSNLQKFPVY 751


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 97  SDISFSLHSGISLQVP*YSICTWWYC 20
           +D+   L   IS+ +  YS+ T+W C
Sbjct: 168 ADLWIGLVYNISITLSLYSLTTFWVC 193


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 102 PRRMRDWLFNIMRDLAERRELTPHYLRM 185
           P    DW+  ++  ++E  EL PH + +
Sbjct: 334 PYTYSDWINVLLGSISEDPELLPHLIEL 361


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 196 ASRSMRR*WGVSSRRSARSRIMLNSQSRMRRGKSDISFSLHSGISLQVP*YSI 38
           +S+S +  W VSSR    S++   S++      +    ++   I   VP YSI
Sbjct: 497 SSQSQQPAWNVSSRYQNNSKVQTTSRASENADTNKTQHNI-KYIDSYVPEYSI 548


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 18  AQYHHVQIEYYGTCREMPECSEN 86
           A+  H +   +   RE+PEC+ N
Sbjct: 625 AKKQHSKSSVHAELRELPECTAN 647


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 80  RERNVRLPAAHARLAVQ 130
           R  NV+L  +HARLA Q
Sbjct: 766 RAANVQLTGSHARLAQQ 782


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 173 VGGELAPLGQVAHY 132
           VGG  A LGQV H+
Sbjct: 33  VGGRSAKLGQVIHH 46


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 2   GAVPRGAVPPRADRVLRDLQGNAGVQRERNV 94
           GA+   +VPP    V +    N GVQ+  NV
Sbjct: 630 GALVTPSVPPVIATVSKTNTTNTGVQQRGNV 660


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 39  IEYYGTCREMPECSEN 86
           ++YYG C    EC  N
Sbjct: 138 VKYYGACYNNAECQLN 153


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 74  VQRERNVRLPAAHARLAVQH 133
           V +++NV +P++   L +QH
Sbjct: 2   VHKKKNVDIPSSQKYLGIQH 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.122    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,161
Number of Sequences: 5004
Number of extensions: 9872
Number of successful extensions: 35
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)