Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_H09
(200 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 28 1.2
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 2.1
10_08_0526 + 18547154-18547197,18547320-18547467,18547558-185476... 26 3.6
07_03_1005 + 23249040-23249228,23250453-23250574,23250654-232508... 26 3.6
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 26 3.6
12_02_0879 + 23960084-23961551,23961796-23962184 26 4.8
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 26 4.8
06_02_0106 - 11898493-11901471 26 4.8
03_01_0602 - 4428651-4428847,4429070-4429150,4429226-4429604,443... 26 4.8
02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569 25 6.4
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 25 6.4
01_06_1341 - 36434098-36436080 25 6.4
10_08_0261 + 16305388-16306104 25 8.4
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 25 8.4
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 108 AAGSLTFRSRCTPAFPCKSRSTRSARGGTAPR 13
+AG L RSR + FP K+ +TRS R G R
Sbjct: 42 SAGGLRLRSRPS-RFPQKAATTRSGRAGAGAR 72
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 108 AAGSLTFRSR---CTPAFPCKSRSTRSARGGTAPRGTAP 1
+A SL RSR P+ R+T A G ++PR TAP
Sbjct: 253 SASSLVSRSRPSLTAPSSGALQRATPGAAGTSSPRSTAP 291
>10_08_0526 +
18547154-18547197,18547320-18547467,18547558-18547604,
18548216-18548270,18548365-18548403,18548517-18548688,
18549135-18549201,18549378-18549434,18549637-18549873,
18551549-18551629,18551803-18551935
Length = 359
Score = 26.2 bits (55), Expect = 3.6
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +1
Query: 163 SPPTTCAWSAR 195
+PPT+CAW+AR
Sbjct: 74 NPPTSCAWAAR 84
>07_03_1005 +
23249040-23249228,23250453-23250574,23250654-23250800,
23250932-23250998,23251763-23251836,23252010-23252102,
23253433-23253550,23254340-23254402,23254774-23254806,
23255325-23255399
Length = 326
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 84 SRCTPAFPCKSRSTRSARGGTAPRGTAP 1
S +P PC++ +T S G APR P
Sbjct: 3 SLASPPLPCRAAATASRSGRPAPRLLGP 30
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 151 SGASSPPTTCAWSARP 198
SGASSPP +CA S P
Sbjct: 612 SGASSPPKSCAASVDP 627
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 69 PECSENEMSDFPRRMRDWL--FNIMRDLAERRELTPHYLR 182
PE S++ DFP + + ++ DL + + PHYLR
Sbjct: 15 PESSKSTSGDFPVNSLENVDVSSVPSDLKRKEKSVPHYLR 54
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 114 ACAAGSLTFRSRCTPAFPCKSRSTRSARGGTAPRGTAP 1
A AAG+ +S TP P S +A GG A AP
Sbjct: 113 AAAAGASAAQSPATPTLPPGFSSGLAAYGGAAASQPAP 150
>06_02_0106 - 11898493-11901471
Length = 992
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 5 AVPRGAVPPRADRVLRDLQGNAGVQRERNVRLPAAHARLAV 127
+ P A+PPR D V R L+ + L HARLAV
Sbjct: 33 STPSSAIPPRVDAVSRLLRATRSAK-----CLSKLHARLAV 68
>03_01_0602 -
4428651-4428847,4429070-4429150,4429226-4429604,
4430084-4430216,4430298-4430404,4430490-4430761,
4431581-4431755
Length = 447
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 87 RSRCTPAFPCKSRSTRSARGGTAPRGTAP 1
+S P FP K + R APRGT P
Sbjct: 16 KSAGKPVFPDKPHKPPTLRAPRAPRGTRP 44
>02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569
Length = 272
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 145 WPSGASSPPTTCAWSARP 198
W + A++PP T AW P
Sbjct: 245 WLTAAAAPPATAAWRRSP 262
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 23 VPPRADRVLRDLQGNAGVQRERNVRLPAAHA 115
VPP ++ R L N G Q+ER ++ A A
Sbjct: 70 VPPALNQFTRTLDKNLGCQKERLLKRAQAEA 100
>01_06_1341 - 36434098-36436080
Length = 660
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 200 LGLALHAQVVGGELAPLGQVAHYVEQ-PVAHAPREV*HFVLAALRHFPASPVVLDLHVVV 24
L LA H + LA +G++ V+ AH + + A+ H PAS +V ++H
Sbjct: 155 LALADHGEEALARLADMGRLRVPVDSYSYAHGLKAC---IAASTSHVPASALVREIHAHA 211
Query: 23 LR 18
+R
Sbjct: 212 VR 213
>10_08_0261 + 16305388-16306104
Length = 238
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 89 FVLAALRHFPASPVVLDLHVVVLRPAAQ 6
+V+AALR P S + LH+ RP +
Sbjct: 80 YVVAALRTIPGSTTIHRLHLYRSRPGGE 107
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 9 CRGAQYHHVQIEYYGTCREMPECSENEM--SDFPRRMRDWL 125
CRG + + E G C ++ E SE E+ SDF M WL
Sbjct: 256 CRGCFFCVARCETCGGCIDLEELSETELACSDF-LCMECWL 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.122 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,450,749
Number of Sequences: 37544
Number of extensions: 88577
Number of successful extensions: 305
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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