Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_H09
         (200 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)                   29   0.59 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 29   0.78 
SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_20743| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               27   3.1  
SB_41393| Best HMM Match : WSC (HMM E-Value=0.06)                      25   9.6  
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  
SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.6  

>SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)
          Length = 467

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 111 CAAGSLTFRSRCTPAFPCKSR-STRSARGGTAPRGT 7
           C   S   R   TP  PCKS+ S+R    GT+P  T
Sbjct: 413 CTTTSSPIRFSSTPGPPCKSKSSSRGISSGTSPVST 448


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 60  REMPECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREAE 200
           R++ E S +E  DF RR+R    N + DL E++      LR++  A+
Sbjct: 137 RQLVEKSRDETGDFERRLR----NEIHDLKEQKRKAEESLRLKTAAD 179


>SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1370

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -3

Query: 126  TASRACAAGSLTFRSRCTP---AFPCKSRS--TRSARGGTAPR 13
            T  R    G  T RS CTP   AF  +S +  TRS+  G APR
Sbjct: 885  TEGRQPRPGLATLRSSCTPTSRAFALQSTACQTRSSARGCAPR 927


>SB_20743| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 375

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 75  TPAFPCKSRSTRSARGGTAPRGTAP 1
           TP    ++RS R  R    PRGTAP
Sbjct: 160 TPVDIARARSPRGQRQSQIPRGTAP 184


>SB_41393| Best HMM Match : WSC (HMM E-Value=0.06)
          Length = 361

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 24  YHHVQIEYYGTCREMP 71
           YH+  I+YYG C   P
Sbjct: 245 YHYFAIQYYGVCYSGP 260


>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 81  RCTPAFPCKSRSTRSARGGTAPRGT 7
           + TP+ P  SR T +A   T+P GT
Sbjct: 463 KTTPSKPSWSRPTPAASASTSPSGT 487


>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  CREMPECSENEMSDFPRR 110
           CR++PE + + M DF RR
Sbjct: 272 CRQVPEANSSWMGDFIRR 289


>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 14  RGAVPPRADRVLRDLQGNAGVQ 79
           RGA  PR  R LR  QGN G++
Sbjct: 303 RGATGPRGLRGLRGPQGNQGLR 324


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 69  PECSENEMSDFPRRMRDWLFNIMR-DLAERRELTPHYLRMERE 194
           P   ENE S+  + +  WL  +MR  +++ R L   +L  +++
Sbjct: 19  PSVIENEKSEQRKELESWLNKLMRVKISDGRTLIGSFLCTDKD 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.122    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,925,675
Number of Sequences: 59808
Number of extensions: 89755
Number of successful extensions: 383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 45
effective length of database: 14,130,097
effective search space used: 296732037
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)